Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10804
         (706 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000069E3F4 Cluster: UPI000069E3F4 related cluster; n...    36   0.97 
UniRef50_A0BLU4 Cluster: Chromosome undetermined scaffold_115, w...    35   1.7  

>UniRef50_UPI000069E3F4 Cluster: UPI000069E3F4 related cluster; n=1;
           Xenopus tropicalis|Rep: UPI000069E3F4 UniRef100 entry -
           Xenopus tropicalis
          Length = 186

 Score = 35.9 bits (79), Expect = 0.97
 Identities = 16/40 (40%), Positives = 26/40 (65%)
 Frame = -2

Query: 507 TVTDWFSYCWETIAIYESEVPRPQGKIGGSNKLVQIDESV 388
           T  DW SYC   + + + E  +P+ KIGG  ++V+IDE++
Sbjct: 39  TAVDWNSYC-RNVCLADLE-HQPKNKIGGKGRVVEIDEAL 76


>UniRef50_A0BLU4 Cluster: Chromosome undetermined scaffold_115, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_115, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 1228

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
 Frame = +2

Query: 104  THTTSVKLFILLLSKYEFICWVTLILLLHVLSMPRKPRQYALQ*FVSNGASSTYFLIN-G 280
            ++ TSV LF +++  +E   ++ L+L+   +   R+ RQY L  + S    +T F I   
Sbjct: 732  SYWTSVMLFDVVVIAFEQFIFIALLLIAKQIDGERQYRQYNLGVYFSILLINTIFSIALN 791

Query: 281  SNMYAKLSYTSPSADRHCRSISLITLFGYYGYIFFT 388
               Y    +   ++  + +   LI  F Y G + FT
Sbjct: 792  CQTYVATYFFKSTSSSNVQLPFLILTFQYLGLVIFT 827


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 711,374,975
Number of Sequences: 1657284
Number of extensions: 14741428
Number of successful extensions: 30768
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30761
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)