Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10804
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.2  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   3.2  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   9.8  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   9.8  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   9.8  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 704 KSLGKFR*IAKRNKFL-GLLEEPGVNTHGCPSRE 606
           + L  +R +    KF  G  E+P V T G PSR+
Sbjct: 502 QQLSNYRNVDNSAKFKDGFQEQPNVVTVGNPSRK 535


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/42 (26%), Positives = 16/42 (38%)
 Frame = -3

Query: 641 PGVNTHGCPSREYYKIMYAFSKGQIYHQTRKELAYIMRNLIV 516
           PG+  HG P    +  M  +  G    Q R+   +    L V
Sbjct: 42  PGLGLHGLPVDSLHSSMAGYPAGNQRKQRRERTTFTRAQLDV 83


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 380 FFTTDSSICTNLLEPPIFP 436
           FF  D+SI  +L   PI+P
Sbjct: 312 FFVYDASITASLGRVPIWP 330


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 380 FFTTDSSICTNLLEPPIFP 436
           FF  D+SI  +L   PI+P
Sbjct: 319 FFVYDASITASLGRVPIWP 337


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 604 YSREGQPCVFTPGSSNSPRN 663
           Y  EG+     PG+S++P N
Sbjct: 80  YECEGRSAGSIPGASSTPEN 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,669
Number of Sequences: 336
Number of extensions: 4295
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)