Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10804
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.6  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    27   3.5  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   6.0  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    25   8.0  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    25   8.0  

>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 599 KIMYAFSKGQIYHQTRKELAYIMRNLIVSMKQ*QIGSV 486
           +IM+   K  ++    KE+  + R LI SMKQ +IG++
Sbjct: 280 RIMFVSKKEMLFTSQFKEIPNVNRELIQSMKQ-EIGNL 316


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = +3

Query: 141 YRNTNLFVGS----H*FYSFMFYPCQESQDNTLSNNL*VMGPHQHIF*LMAPICTQNFHT 308
           Y N N+  G+    + +Y+  +YP   +Q   +SNN   +   +  F  +AP     + T
Sbjct: 110 YANNNINNGTLPQQNAYYANSYYPSYYAQSQAISNNRPGVSGFRPAFNSVAPCYGSQWQT 169

Query: 309 H--LHP 320
           H  +HP
Sbjct: 170 HQSVHP 175


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 332 CRSISLITLFGYYGYIFFTTDSSICTNLLE 421
           CR+ SL+   G  GYIF     ++  N +E
Sbjct: 500 CRTSSLVEELGQVGYIFSDKTGTLTRNQME 529


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 259 NIFFD*WLQYVRKTFIHISIR 321
           N+F+D WL YV  TF  + ++
Sbjct: 95  NLFYDGWLSYVFHTFSGVYLK 115


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = -2

Query: 567 LSSNKERISIYYEESDSFNETVTDWFSYCWETIAIYESEV 448
           L   +ER+ +  +E+ +F+E +     Y  ET+  + S++
Sbjct: 641 LDKERERVELPLQEASAFSEDLRSRLKYIRETLESWASKM 680


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,048,819
Number of Sequences: 5004
Number of extensions: 67286
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)