Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10804
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0480 + 17958726-17958926,17959294-17959382,17960176-179602...    30   2.1  
06_03_1239 + 28610231-28610323,28610402-28610486,28610581-286108...    28   6.3  
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396           28   8.3  
02_02_0537 + 11308195-11309667                                         28   8.3  
01_05_0645 - 23899579-23904483                                         28   8.3  

>09_04_0480 +
           17958726-17958926,17959294-17959382,17960176-17960242,
           17960329-17960444,17960978-17961044,17961158-17961206,
           17961630-17961715,17961825-17962078,17962158-17962213,
           17962683-17962768,17963047-17963139,17963790-17964219,
           17964338-17964861,17964962-17965190,17965271-17965566
          Length = 880

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = +2

Query: 410 NLLEPPIFP*GLGTSDSYMAIVSQQ*LNQSVTVSLKLSDSS 532
           N++ P +FP G GT DS++AI S + +N  V +   + DS+
Sbjct: 408 NVISPSMFPSGKGTMDSHVAIGSVE-INTDV-IDADMKDST 446


>06_03_1239 +
           28610231-28610323,28610402-28610486,28610581-28610870,
           28611018-28611137,28611450-28611608
          Length = 248

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/22 (68%), Positives = 15/22 (68%)
 Frame = -2

Query: 447 PRPQGKIGGSNKLVQIDESVVK 382
           P   G  GGS  LVQIDESVVK
Sbjct: 163 PYLSGTGGGSLDLVQIDESVVK 184


>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
          Length = 1357

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 60   ILHRHPNGLPTLQ*RLTQPVLNCLFCCYRNT 152
            ILH HPN         TQP   C  C Y+++
Sbjct: 1015 ILHNHPNSFLPQYILRTQPKAPCRSCAYKDS 1045


>02_02_0537 + 11308195-11309667
          Length = 490

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 60  ILHRHPNGLPTLQ*RLTQPVLNCLFCCYRNT 152
           ILH HPN         TQP   C  C Y+++
Sbjct: 173 ILHNHPNSFLPQYILRTQPKAPCRSCAYKDS 203


>01_05_0645 - 23899579-23904483
          Length = 1634

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 60   ILHRHPNGLPTLQ*RLTQPVLNCLFCCYRNT 152
            ILH HPN         TQP   C  C Y+++
Sbjct: 1292 ILHNHPNSFLPQYILRTQPKAPCRSCAYKDS 1322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,281,822
Number of Sequences: 37544
Number of extensions: 372979
Number of successful extensions: 720
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)