Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10804
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73103-5|CAA97422.1|  380|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    28   7.5  
AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed ...    27   9.9  

>Z73103-5|CAA97422.1|  380|Caenorhabditis elegans Hypothetical
           protein C08F8.6 protein.
          Length = 380

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 623 GCPSREYYKIMYAFSKGQIYHQTRKELAYIM 531
           GCP REY  I+ A  KGQ + +   E  Y +
Sbjct: 252 GCP-REYLDILEAIDKGQFFDEPNYERIYYL 281


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 448 NFRLVYGDCLPAITEPIC 501
           N+RLVYG C+P IT  IC
Sbjct: 262 NYRLVYGYCVP-ITSSIC 278


>AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed
           with polycystins protein4 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 239 VSNGASSTYFLINGSNMYAKLSYTSPSADRHCRSISLITLFGYY 370
           V+ GAS +Y   + + +Y   +Y   +A  +C S  L ++  YY
Sbjct: 56  VNGGASFSYGNASATALYELSAYAISAATTNCTSTCLTSVSAYY 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,527,704
Number of Sequences: 27780
Number of extensions: 360690
Number of successful extensions: 787
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)