Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10804
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.6  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   6.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.5  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   6.5  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   6.5  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   8.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 332 CRSISLITLFGYYGYIFFTTDSSI 403
           C   S++ + GY  YI+FTT  +I
Sbjct: 535 CGLSSMLCIPGYMIYIWFTTSGTI 558


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 332 CRSISLITLFGYYGYIFFTTDSSI 403
           C   S++ + GY  YI+FTT  +I
Sbjct: 588 CGLSSMLCIPGYMIYIWFTTSGTI 611


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 552 ERISIYYEESDSFNETVTDWFSY 484
           E + +Y+   DSF+   ++ F Y
Sbjct: 211 EGLIVYHNSDDSFHRLTSNTFDY 233


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 448 NFRLVYGDCLPAITEPICYCFIETIRFLIIYAN 546
           N  ++  D   AIT+P+ Y    T R +I+Y +
Sbjct: 131 NLCMISVDRFCAITKPLKYGVKRTPRRMIVYVS 163


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 552 ERISIYYEESDSFNETVTDWFSY 484
           E + +Y+   DSF+   ++ F Y
Sbjct: 211 EGLIVYHNSDDSFHRLTSNTFDY 233


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 552 ERISIYYEESDSFNETVTDWFSY 484
           E + +Y+   DSF+   ++ F Y
Sbjct: 211 EGLIVYHNSDDSFHRLTSNTFDY 233


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 213 GFLGMDKT*RSKISVTQQINSYFDNSKINNLT 118
           G + ++K   + +  TQ+IN  F   ++ N+T
Sbjct: 74  GLMCVEKVSTTIVPTTQEINKPFKRLELFNIT 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,556
Number of Sequences: 438
Number of extensions: 4670
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)