Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10804
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15540.1 68418.m01819 expressed protein low similarity to DNA...    30   1.3  
At5g66660.1 68418.m08403 hypothetical protein                          29   3.0  
At2g40935.2 68415.m05054 expressed protein low similarity to PGP...    29   4.0  
At2g36700.1 68415.m04503 pectinesterase family protein contains ...    28   5.2  
At1g13050.1 68414.m01513 expressed protein                             28   6.9  
At3g59310.2 68416.m06612 expressed protein identical to anthocya...    27   9.2  
At3g59310.1 68416.m06611 expressed protein identical to anthocya...    27   9.2  

>At5g15540.1 68418.m01819 expressed protein low similarity to DNA
            repair and meiosis protein Rad9 [Coprinus cinereus]
            GI:1353390, SP|Q09725 Sister chromatid cohesion protein
            mis4 {Schizosaccharomyces pombe}
          Length = 1755

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -2

Query: 576  GTNLSSNKERISIYYE-ESDSFNETVTDWFSYCWETIAIYESEVP-RPQGKIGGSNKLVQ 403
            G  +S NK   SI  + ++ ++N +V  +  YC ET+A+     P  P   +   N+++Q
Sbjct: 1427 GNRVSRNKFMTSIVRKFDNPTWNGSVISFLKYCTETLALLPFTSPDEPLYLVYSINRVMQ 1486

Query: 402  IDESVVKN 379
            I    V++
Sbjct: 1487 IRAGAVES 1494


>At5g66660.1 68418.m08403 hypothetical protein
          Length = 398

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 510 ETVTDWFSYCWETIAIYESEVPRPQGKIGGSNKLVQIDESVVKNI 376
           E    WFS  W+    YE  V R +G +      VQ++   +KNI
Sbjct: 277 EITGKWFSQMWKK---YEKAVKRQRGLVLTMESRVQVNNEAMKNI 318


>At2g40935.2 68415.m05054 expressed protein low similarity to
           PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam
           profile PF04749: Protein of unknown function, DUF614
          Length = 166

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +3

Query: 369 MVIYFLQLIRQFAPIY*SPLSFLEVLELPTRI 464
           MVI++++L+R++A +Y + L    +L   TRI
Sbjct: 1   MVIWYMRLLRRYAELYATTLCHPNLLHFTTRI 32


>At2g36700.1 68415.m04503 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 333

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -2

Query: 699 SGQV*INCQTKQVSRA-IGRAWCEYARLSLT*ILQNYVCF**GTN-LSSNKERISIYYEE 526
           +G V +NC+    +R  +GRAW  YAR+  +    + V    G N +   K + ++YY E
Sbjct: 234 TGFVFVNCKITGSARVWLGRAWRPYARVIFSKTYMSRVVSLDGWNDMGDPKTQRTVYYGE 293


>At1g13050.1 68414.m01513 expressed protein
          Length = 317

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 23/103 (22%), Positives = 48/103 (46%)
 Frame = +2

Query: 173 LILLLHVLSMPRKPRQYALQ*FVSNGASSTYFLINGSNMYAKLSYTSPSADRHCRSISLI 352
           ++LL+++ + PR P  + +     N A+     +   ++   +++T+PS      S+   
Sbjct: 154 ILLLVYLANRPRSP-YFDISAATLNTANLDMGYVLNGDLAVVVNFTNPSKKS---SVD-- 207

Query: 353 TLFGYYGYIFFTTDSSICTNLLEPPIFP*GLGTSDSYMAIVSQ 481
             F Y  +  +  ++ I T  +EP I P G+    S+  + SQ
Sbjct: 208 --FSYVMFELYFYNTLIATEHIEPFIVPKGMSMFTSFHLVSSQ 248


>At3g59310.2 68416.m06612 expressed protein identical to
           anthocyanin-related membrane protein 1 [Arabidopsis
           thaliana] GI:16416383; supporting cDNA
           gi|16416382|dbj|AB060644.1|
          Length = 363

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +2

Query: 242 SNGASSTYFLINGSNMYAKLSYTSPSADRHCRSISLITLFGYYGYIFFTTDSSI 403
           SN     + ++ G+ +YA  + +     ++  ++ L+T  G++G I      SI
Sbjct: 159 SNPVKGDFLVLAGATLYAVSNTSEEFLVKNADTVELMTFLGFFGAIISAIQVSI 212


>At3g59310.1 68416.m06611 expressed protein identical to
           anthocyanin-related membrane protein 1 [Arabidopsis
           thaliana] GI:16416383; supporting cDNA
           gi|16416382|dbj|AB060644.1|
          Length = 332

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +2

Query: 242 SNGASSTYFLINGSNMYAKLSYTSPSADRHCRSISLITLFGYYGYIFFTTDSSI 403
           SN     + ++ G+ +YA  + +     ++  ++ L+T  G++G I      SI
Sbjct: 159 SNPVKGDFLVLAGATLYAVSNTSEEFLVKNADTVELMTFLGFFGAIISAIQVSI 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,400,775
Number of Sequences: 28952
Number of extensions: 327989
Number of successful extensions: 688
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)