Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10803
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    28   1.6  

>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1188

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
 Frame = +3

Query: 474  YKSLLVFEKRRD*VKKINIFSQDRLIRF---IQKNCN*SLGTKNSP*KKLRYVIS-H*LY 641
            Y+S +VFE R+   +K N+F+   L+     +++N    + T + P   L+ +I      
Sbjct: 879  YRSAVVFEFRKQLQRKHNVFAMVWLVDLEDNVEQNIRVPIFTSSKPAHVLQNMIDFDHPD 938

Query: 642  KKSDFLFFNFLFERLVCF 695
            K+S+F    +L  R +CF
Sbjct: 939  KESEFKIIGYLSTR-ICF 955


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,173
Number of Sequences: 5004
Number of extensions: 54141
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)