Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10803
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0410 - 23223701-23223714,23223863-23225159,23225314-232262...    29   3.8  
07_03_0466 + 18474929-18475315,18476035-18476298,18476717-184767...    28   8.7  

>11_06_0410 -
           23223701-23223714,23223863-23225159,23225314-23226225,
           23226952-23227023,23227323-23227471,23227879-23227912
          Length = 825

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
 Frame = -1

Query: 169 LLFLVYINL-----LWNFFFFYLKSVFVKACLFTIILKYILADS 53
           LL + Y+NL     LW F F++   + V  C + I++++I + S
Sbjct: 214 LLVVAYMNLTRGSKLWRFPFWFFWGLLVLQCFYKILVRHIASKS 257


>07_03_0466 +
           18474929-18475315,18476035-18476298,18476717-18476755,
           18476756-18476878,18477118-18477240
          Length = 311

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 209 VIHLFIAHVLNANLRLFGFLMDTIIRTGLN*NGTTRQASVSNKKESSKSIHPVK 370
           V+ LF+  V+  +L+    L+D   R  L+  G  R+  V  +   S +IH V+
Sbjct: 223 VMTLFMLQVIYRDLKSSNVLLDEEFRPKLSDFGLAREGPVDGQTHVSTAIHAVQ 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,987,258
Number of Sequences: 37544
Number of extensions: 254502
Number of successful extensions: 386
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)