Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10803
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006780-4|AAO21411.1|  312|Caenorhabditis elegans Hypothetical ...    31   0.84 
U42439-2|AAA83506.1|  162|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical...    28   7.9  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    28   7.9  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    28   7.9  

>AC006780-4|AAO21411.1|  312|Caenorhabditis elegans Hypothetical
           protein Y47D9A.2b protein.
          Length = 312

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -2

Query: 486 IKICNFLDLISLYVSFHFLTDFKVLNSTIC 397
           +K+C+FL+ I   V+FHF  + KV  ++IC
Sbjct: 210 LKLCSFLEAIPTLVNFHF--EIKVKTNSIC 237


>U42439-2|AAA83506.1|  162|Caenorhabditis elegans Hypothetical
           protein F19C7.5 protein.
          Length = 162

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = -3

Query: 560 DEPNQSIL*KNINFFYLVSSFLENQ*RFVTFWILLVCTYPFTF*PTSKFSIQLYVFLCLL 381
           +EPN ++    I  ++L+SSFL      VT  +L    +PF F P   FS    +FL +L
Sbjct: 4   EEPNWNLF--EIFLYHLISSFLA-----VT--VLFTTVFPFDFKPNITFSKYENIFLIIL 54


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
           protein K08C7.3b protein.
          Length = 3672

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 357 IDFDDSFLLETDACRVVPFQFSPVLIMVSMRKPNSLKFALSTCAIN 220
           I  DDS    TD   + P + + ++I +   +P+S +FA S    N
Sbjct: 204 ISEDDSVTCRTDMASLQPLENAEMVIRILEHRPSSRQFATSEALQN 249


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
           protein K08C7.3a protein.
          Length = 3704

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 357 IDFDDSFLLETDACRVVPFQFSPVLIMVSMRKPNSLKFALSTCAIN 220
           I  DDS    TD   + P + + ++I +   +P+S +FA S    N
Sbjct: 204 ISEDDSVTCRTDMASLQPLENAEMVIRILEHRPSSRQFATSEALQN 249


>AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical
           protein Y71A12B.17 protein.
          Length = 913

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 287 TGLN*NGTTRQASVSNKKESSKSIHPVKSYEVTNIKKHIVE 409
           T L  +  TR+   S K +  K+    + Y+V N  KH++E
Sbjct: 507 TNLKNSAATRRCLASIKSQFKKNHDDGERYDVVNCLKHVIE 547


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3704

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 357 IDFDDSFLLETDACRVVPFQFSPVLIMVSMRKPNSLKFALSTCAIN 220
           I  DDS    TD   + P + + ++I +   +P+S +FA S    N
Sbjct: 204 ISEDDSVTCRTDMASLQPLENAEMVIRILEHRPSSRQFATSEALQN 249


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
           protein.
          Length = 3704

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 357 IDFDDSFLLETDACRVVPFQFSPVLIMVSMRKPNSLKFALSTCAIN 220
           I  DDS    TD   + P + + ++I +   +P+S +FA S    N
Sbjct: 204 ISEDDSVTCRTDMASLQPLENAEMVIRILEHRPSSRQFATSEALQN 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,705,947
Number of Sequences: 27780
Number of extensions: 283633
Number of successful extensions: 662
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)