Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10803
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    27   0.24 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.2  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +2

Query: 209 VIHLFIAHVLNANLRLFGFLMDTIIRTGLN*NGTTRQASVSNKKESSKSIHPVKSYEVTN 388
           ++H  I  +  +++ L       I   G N N T +    +NKK  S   + V    + N
Sbjct: 511 IVHYGIGFITQSDIELANTFKAIIY--GFNVNATKQIKDEANKKGVSLRFYNVVYKLIDN 568

Query: 389 IKKHIVEL 412
           IKK I ++
Sbjct: 569 IKKEIYDI 576


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 520 FFT*SLLFSKTNKDL*LSGSY*FVRILSLFNRLQSSQFNYMFFYVCYLITFDWVN 356
           FFT     SKTN     +G Y  +++  LF R  S     ++   C L+   WV+
Sbjct: 214 FFT-DYCNSKTN-----TGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVS 262


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 520 FFT*SLLFSKTNKDL*LSGSY*FVRILSLFNRLQSSQFNYMFFYVCYLITFDWVN 356
           FFT     SKTN     +G Y  +++  LF R  S     ++   C L+   WV+
Sbjct: 214 FFT-DYCNSKTN-----TGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVS 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,487
Number of Sequences: 438
Number of extensions: 3460
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)