Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10799X
         (376 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal prote...    69   8e-13
AC024805-6|AAK39340.1|  448|Caenorhabditis elegans Hypothetical ...    28   1.9  
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr...    27   3.3  
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.     27   3.3  
AF022973-11|AAK84524.3|  560|Caenorhabditis elegans Hypothetical...    27   3.3  
AC025726-12|AAK73914.3|  243|Caenorhabditis elegans Ubiquitin co...    27   3.3  
Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z83128-4|CAB05639.1|  348|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AC024863-1|AAF60877.1|  481|Caenorhabditis elegans Prion-like-(q...    27   5.8  
Z79752-3|CAB02078.2|  130|Caenorhabditis elegans Hypothetical pr...    26   7.6  
U55856-5|AAA98023.1|  441|Caenorhabditis elegans Synaptotagmin p...    26   7.6  
U55856-4|AAK68354.1|  443|Caenorhabditis elegans Synaptotagmin p...    26   7.6  
L15302-1|AAA28145.1|  441|Caenorhabditis elegans synaptotagmin I...    26   7.6  

>U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 12 protein.
          Length = 140

 Score = 69.3 bits (162), Expect = 8e-13
 Identities = 38/77 (49%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
 Frame = +3

Query: 24  MADVEVEVPTNPI-LSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVL 200
           M+D   +V   P  ++   MD   AL+ VL+ A    GL  GLHE  KALDKR+A  CVL
Sbjct: 1   MSDAGGDVQVAPAAVAQGPMDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVL 60

Query: 201 AENCGEAAYKKLVQALC 251
           AENC E  Y KLV+ LC
Sbjct: 61  AENCDEPQYVKLVETLC 77



 Score = 62.5 bits (145), Expect = 9e-11
 Identities = 25/37 (67%), Positives = 32/37 (86%)
 Frame = +2

Query: 254 QHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCS 364
           +HQIPL+KV + K +GE+ GLCK DK+GKARK+VGCS
Sbjct: 79  EHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCS 115


>AC024805-6|AAK39340.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.9 protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 129 GGLVHGLHEAAKALDKRQAVLCVLAENCGEAAYKKL 236
           GGLV G+  A KAL     V+ V++E C +A  K L
Sbjct: 216 GGLVAGVATAVKALSPTTEVIGVVSETC-QAIVKSL 250


>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical protein
            F13E6.6 protein.
          Length = 1340

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -1

Query: 358  ADNLPRLAILVNLAETSPFSKLFV---VVNLDQWNLMLLH 248
            A+NL RL  L    +TSPF K FV     NL+     L+H
Sbjct: 946  AENLRRLEELQKRTDTSPFDKEFVGHDYTNLNLTKFRLVH 985


>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical protein
            F13E6.6 protein.
          Length = 1340

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -1

Query: 358  ADNLPRLAILVNLAETSPFSKLFV---VVNLDQWNLMLLH 248
            A+NL RL  L    +TSPF K FV     NL+     L+H
Sbjct: 946  AENLRRLEELQKRTDTSPFDKEFVGHDYTNLNLTKFRLVH 985


>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
          Length = 1293

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -1

Query: 358  ADNLPRLAILVNLAETSPFSKLFV---VVNLDQWNLMLLH 248
            A+NL RL  L    +TSPF K FV     NL+     L+H
Sbjct: 899  AENLRRLEELQKRTDTSPFDKEFVGHDYTNLNLTKFRLVH 938


>AF022973-11|AAK84524.3|  560|Caenorhabditis elegans Hypothetical
           protein F25G6.1 protein.
          Length = 560

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 57  PILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKAL 170
           P+ +G    +     E+L+T +I    +HG  EAAKAL
Sbjct: 122 PVDNGKKKRLTAKECEILRTMVIPHRNIHGAMEAAKAL 159


>AC025726-12|AAK73914.3|  243|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein3 protein.
          Length = 243

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 68  RQDGVGGDLDFNISHGCDY 12
           +QD V  D+D+N   GCDY
Sbjct: 197 QQDDVFDDIDYNDDFGCDY 215


>Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical
           protein T04D3.2 protein.
          Length = 604

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 84  VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCGEAAY 227
           V VAL +   T LIH   +H L++  K L     V C+L ++  +A Y
Sbjct: 16  VVVALSDRQYTFLIHS-FIHSLYQHTKRLLFSDFVSCLLPKHLQQAMY 62


>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
           protein C30G12.6a protein.
          Length = 1100

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 230 LVCGFTTVLSQNT*YCLPLVKSFSGFVK 147
           L+C    ++ Q +  CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845


>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
           protein C30G12.6b protein.
          Length = 1097

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 230 LVCGFTTVLSQNT*YCLPLVKSFSGFVK 147
           L+C    ++ Q +  CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845


>Z83128-4|CAB05639.1|  348|Caenorhabditis elegans Hypothetical
           protein W01D2.5 protein.
          Length = 348

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 127 WIKAVFSTSCSATFTSMLLP 68
           W+ AVF  +CS +F +M +P
Sbjct: 87  WLIAVFPVACSCSFIAMCVP 106


>AC024863-1|AAF60877.1|  481|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
           isoform a protein.
          Length = 481

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 142 CTRPPW-IKAVFSTSCSATFTSMLLPDKMGLVGTSTSTSAMVVTI 11
           C   PW IK   +T C     S+L P + GLVG    T+ +++ I
Sbjct: 331 CKNCPWGIKD--NTYCQDDHGSVLDPSEAGLVGMGWRTATIILAI 373


>Z79752-3|CAB02078.2|  130|Caenorhabditis elegans Hypothetical
           protein D2005.3 protein.
          Length = 130

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = +3

Query: 201 AENCGEAAYKKLVQALCNNIRFHWSRLTTTKSLENGLVSARLTRMARRGRLS 356
           AEN   A    + Q L        S L   K  +  +V A L  MARRG+LS
Sbjct: 37  AENQETAKNGMISQILDQAAMQRLSNLAVAKPEKAQMVEAALINMARRGQLS 88


>U55856-5|AAA98023.1|  441|Caenorhabditis elegans Synaptotagmin
           protein 1, isoform a protein.
          Length = 441

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 248 VQQHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVGI 376
           + Q  IPL K+D    + EW  +     D +A K +G  C  +
Sbjct: 258 IGQVLIPLGKIDLGAVIEEWKDIAPPPDDKEAEKSLGDICFSL 300


>U55856-4|AAK68354.1|  443|Caenorhabditis elegans Synaptotagmin
           protein 1, isoform b protein.
          Length = 443

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 248 VQQHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVGI 376
           + Q  IPL K+D    + EW  +     D +A K +G  C  +
Sbjct: 258 IGQVLIPLGKIDLGAVIEEWKDIAPPPDDKEAEKSLGDICFSL 300


>L15302-1|AAA28145.1|  441|Caenorhabditis elegans synaptotagmin I
           protein.
          Length = 441

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 248 VQQHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVGI 376
           + Q  IPL K+D    + EW  +     D +A K +G  C  +
Sbjct: 258 IGQVLIPLGKIDLGAVIEEWKDIAPPPDDKEAEKSLGDICFSL 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,969,440
Number of Sequences: 27780
Number of extensions: 170122
Number of successful extensions: 447
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)