Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10799X
(376 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 71 3e-13
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 71 3e-13
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 71 3e-13
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 68 2e-12
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 68 2e-12
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th... 32 0.11
At5g13730.1 68418.m01598 RNA polymerase sigma subunit SigD (sigD... 28 1.8
At5g05930.2 68418.m00655 guanylyl cyclase-related (GC1) similar ... 28 2.3
At5g05930.1 68418.m00656 guanylyl cyclase-related (GC1) similar ... 28 2.3
At5g45640.1 68418.m05612 subtilase family protein contains Pfam ... 27 3.1
At5g02910.1 68418.m00234 F-box family protein similar to ribosom... 27 4.1
At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase / lon... 27 5.4
At1g78700.1 68414.m09173 brassinosteroid signalling positive reg... 27 5.4
At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR... 26 7.1
At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR... 26 7.1
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi... 26 9.4
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 70.9 bits (166), Expect = 3e-13
Identities = 31/59 (52%), Positives = 45/59 (76%)
Frame = +3
Query: 75 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCGEAAYKKLVQALC 251
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C + Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82
Score = 62.1 bits (144), Expect = 1e-10
Identities = 26/40 (65%), Positives = 31/40 (77%)
Frame = +2
Query: 257 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVGI 376
H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+ I
Sbjct: 85 HSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVI 124
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 70.9 bits (166), Expect = 3e-13
Identities = 31/59 (52%), Positives = 45/59 (76%)
Frame = +3
Query: 75 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCGEAAYKKLVQALC 251
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C + Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82
Score = 62.1 bits (144), Expect = 1e-10
Identities = 26/40 (65%), Positives = 31/40 (77%)
Frame = +2
Query: 257 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVGI 376
H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+ I
Sbjct: 85 HSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVI 124
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 70.9 bits (166), Expect = 3e-13
Identities = 31/59 (52%), Positives = 45/59 (76%)
Frame = +3
Query: 75 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCGEAAYKKLVQALC 251
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C + Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82
Score = 62.1 bits (144), Expect = 1e-10
Identities = 26/40 (65%), Positives = 31/40 (77%)
Frame = +2
Query: 257 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVGI 376
H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+ I
Sbjct: 85 HSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVI 124
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 68.1 bits (159), Expect = 2e-12
Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Frame = +3
Query: 27 ADVEVEVPT-NPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 203
A V V P P +MD+ AL+ L+ A +GG+V GLHE AK ++KR A L VLA
Sbjct: 7 APVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLA 66
Query: 204 ENCGEAAYKKLVQALCNNIRFHWSRLTTTKS 296
E+C + Y KLV+ALC + H RL T S
Sbjct: 67 EDCNQPDYVKLVKALCAD---HEVRLLTVPS 94
Score = 61.7 bits (143), Expect = 2e-10
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = +2
Query: 257 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCV 370
H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+
Sbjct: 85 HEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCL 122
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 68.1 bits (159), Expect = 2e-12
Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Frame = +3
Query: 27 ADVEVEVPT-NPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 203
A V V P P +MD+ AL+ L+ A +GG+V GLHE AK ++KR A L VLA
Sbjct: 7 APVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLA 66
Query: 204 ENCGEAAYKKLVQALCNNIRFHWSRLTTTKS 296
E+C + Y KLV+ALC + H RL T S
Sbjct: 67 EDCNQPDYVKLVKALCAD---HEVRLLTVPS 94
Score = 61.7 bits (143), Expect = 2e-10
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = +2
Query: 257 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCV 370
H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+
Sbjct: 85 HEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCL 122
>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative similar to SP|O04630
Threonyl-tRNA synthetase, mitochondrial precursor (EC
6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
thaliana}; contains Pfam profiles PF00587: tRNA
synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain, PF02824: TGS domain
Length = 458
Score = 32.3 bits (70), Expect = 0.11
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +3
Query: 168 LDKRQAVLCVLAENCGEAAYKKLVQALCNNIRFHWSRLTTTKSLENGLVSAR 323
L RQA++C L+E+C ++Y K VQ N + ++ + +SL + AR
Sbjct: 355 LSPRQAIVCSLSEDC--SSYAKQVQKQINEVGYYVDIDESDRSLRKKVADAR 404
>At5g13730.1 68418.m01598 RNA polymerase sigma subunit SigD (sigD) /
sigma-like factor (SIG4) identical to RNA polymerase
sigma subunit SigD [Arabidopsis thaliana] GI:4972296,
sigma-like factor [Arabidopsis thaliana] GI:3983260;
contains Pfam profiles PF04545: Sigma-70, region 4,
PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2
Length = 419
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 308 PILQAFCCCQP*PVESDVVAQSLNKFLVCGFTTV 207
P+L+ CQP P S + L+ LVCG TTV
Sbjct: 24 PLLRTTHQCQPSPSLSSPFSIKLSTALVCGDTTV 57
>At5g05930.2 68418.m00655 guanylyl cyclase-related (GC1) similar to
guanylyl cyclase (GC1) GI:21436486 from [Arabidopsis
thaliana]; identical to cDNA putative guanylate cyclase
GI:21436486
Length = 210
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +3
Query: 3 DSQIVTTMADVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQ 182
+S I+ V + + +LSGN + + + Q+ L + + LV GLH +
Sbjct: 92 ESGIIIQCRSVSIHEISCLLLSGNYIAIALVDQDKLSKSWLEEVLVSGLHSSNSCYTGHY 151
Query: 183 AVLC 194
V+C
Sbjct: 152 VVIC 155
>At5g05930.1 68418.m00656 guanylyl cyclase-related (GC1) similar to
guanylyl cyclase (GC1) GI:21436486 from [Arabidopsis
thaliana]; identical to cDNA putative guanylate cyclase
GI:21436486
Length = 274
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +3
Query: 3 DSQIVTTMADVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQ 182
+S I+ V + + +LSGN + + + Q+ L + + LV GLH +
Sbjct: 156 ESGIIIQCRSVSIHEISCLLLSGNYIAIALVDQDKLSKSWLEEVLVSGLHSSNSCYTGHY 215
Query: 183 AVLC 194
V+C
Sbjct: 216 VVIC 219
>At5g45640.1 68418.m05612 subtilase family protein contains Pfam
domain, PF00082: Subtilase family; contains Pfam domain,
PF02225: protease associated (PA) domain
Length = 754
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 192 IVLLASCQEL*RLREDRAQDHHGLKLSLAP 103
+ LLASC + +LRE+RA +G L P
Sbjct: 18 VPLLASCTKEKQLREERASSINGFAAELTP 47
>At5g02910.1 68418.m00234 F-box family protein similar to ribosomal
RNA apurinic site specific lyase [Triticum aestivum]
GI:6505722; contains F-box domain Pfam:PF00646
Length = 458
Score = 27.1 bits (57), Expect = 4.1
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -3
Query: 92 YIHVHVVTRQDGVGGDLDFNISHGCDYLTV 3
++H ++ R D V G ++F ISH + L++
Sbjct: 81 HLHTTLLNRIDSVNGCIEFAISHNAEKLSL 110
>At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase /
long-chain acyl-CoA synthetase nearly identical to
acyl-CoA synthetase (MF7P) from Brassica napus
[gi:1617270]
Length = 666
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 103 SCSATFTSMLLPDKMGLVGT 44
SC+ TF S LPD++G++GT
Sbjct: 423 SCAGTFVS--LPDELGMLGT 440
>At1g78700.1 68414.m09173 brassinosteroid signalling positive
regulator-related contains similarity to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 325
Score = 26.6 bits (56), Expect = 5.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 130 PWIKAVFSTSCSATFTSMLLPDKMGLVGTSTS 35
PW+K + +TS S+ +S LP+ + + G S S
Sbjct: 134 PWLKHLSTTSSSSASSSSRLPNYLYIPGGSIS 165
>At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1298
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +3
Query: 60 ILSGNNMDVNVALQEVLKTALIH 128
+L+ + +DVN+AL+ ++ +LIH
Sbjct: 495 LLADSGLDVNIALENLVDKSLIH 517
>At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1353
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +3
Query: 60 ILSGNNMDVNVALQEVLKTALIH 128
+L+ + +DVN+AL+ ++ +LIH
Sbjct: 456 LLADSGLDVNIALENLVDKSLIH 478
>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 603
Score = 25.8 bits (54), Expect = 9.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 287 NKKLGEWAGLCKIDKDGKARKIVGCSCVGI 376
NKK L K+ KD KA K+ GCS + +
Sbjct: 446 NKKWEYVDSLRKVMKDRKAVKVPGCSSIEV 475
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,565,237
Number of Sequences: 28952
Number of extensions: 159081
Number of successful extensions: 457
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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