Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10798
(335 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 126 7e-31
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 124 5e-30
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 30 0.11
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 0.58
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 27 0.77
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 27 1.0
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 27 1.0
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 26 1.8
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 1.8
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 25 2.3
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 25 2.3
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 25 3.1
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 4.1
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 24 5.4
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb... 24 5.4
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 24 5.4
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 24 7.1
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 24 7.1
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 23 9.4
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 23 9.4
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 126 bits (305), Expect = 7e-31
Identities = 59/86 (68%), Positives = 70/86 (81%)
Frame = +1
Query: 1 IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDEL 180
IPRLLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL VAVGHVDM ++L
Sbjct: 119 IPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQL 178
Query: 181 AQNVHLSINFLVSLLKKHWQNVRSFI 258
A N+ L+INFLVSLLKK WQN+ S +
Sbjct: 179 AANLSLAINFLVSLLKKGWQNIGSLV 204
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 124 bits (298), Expect = 5e-30
Identities = 56/86 (65%), Positives = 70/86 (81%)
Frame = +1
Query: 1 IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDEL 180
IPRLLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL VAVGHV+M+ ++L
Sbjct: 119 IPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQL 178
Query: 181 AQNVHLSINFLVSLLKKHWQNVRSFI 258
N+ L++NFLVSLLKK WQN+ S +
Sbjct: 179 IANIMLAVNFLVSLLKKGWQNIGSLV 204
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3
Query: 258 MKSTMGPPQRLY 293
+KSTMG P RLY
Sbjct: 205 VKSTMGKPHRLY 216
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 29.9 bits (64), Expect = 0.11
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Frame = +1
Query: 1 IPRLLGPGLNKAGKFPGLLSHQ----ESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMT 168
+PR+LG + K P + E + +++ G F + GHV T
Sbjct: 150 LPRILGKTFYQKSKVPVPVKISKGTAEQLKREVVSAYGATYFNSAPCSSFMIKCGHVSNT 209
Query: 169 PDELAQNVHLSINFL 213
ELA+NV + F+
Sbjct: 210 STELAENVESILQFV 224
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.5 bits (58), Expect = 0.58
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Frame = +1
Query: 76 TQKIDEVKGTIKFQMKK----VLCLSVAVGHVDMTPDEL----AQNVHLSINFLVSLLKK 231
T++I+ GT+ V LS+A+G+++ P L N H+S+ L L+K
Sbjct: 2682 TERINNTDGTVVSSHNPFVFFVNVLSMAIGNINDAPVRLNALLMDNAHVSLRRLFELVKN 2741
Query: 232 HW 237
H+
Sbjct: 2742 HY 2743
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 27.1 bits (57), Expect = 0.77
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 176 SSGVMSTWPTATERHNTFFIWNLMVPLTSSIFC 78
S+G ++ T T R F WN+++ +++FC
Sbjct: 236 STGYKGSYLTVTNRDAVFVGWNIVIGGFATVFC 268
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 1.0
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +3
Query: 117 NEEGVVSFCSSWPCGHDS**ACSECASFHQLPCV 218
NE C W C D C++C ++ + CV
Sbjct: 257 NEPSNCKVCKKW-CAFDFSVQCADCKKYYHMDCV 289
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 26.6 bits (56), Expect = 1.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 162 HDS**ACSECASFHQLPCVTAQETLAEC 245
H S + S ++HQL CV Q+ L+EC
Sbjct: 52 HPSINSLSSFQTYHQLLCVLEQKHLSEC 79
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 1.8
Identities = 8/40 (20%), Positives = 22/40 (55%)
Frame = +2
Query: 131 CVFL*QLAMWT*LLMSLLRMCIFPSTSLCHCSRNTGRMSD 250
C FL ++ + + + +C+F T++ + +N R+++
Sbjct: 37 CTFLLSTILYLGIAVIMSHLCVFDDTAMLYLRQNRSRLAE 76
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 1.8
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -3
Query: 189 ILSKLIRSHVHMANCYRKTQHLLHLELNGSLD-FIN-LLRHGLLVGEKTREFTSFVQ 25
+L K++ + ++C+++ +HL+H+ L F N L+ L+ F FVQ
Sbjct: 1047 VLMKVVGVFANYSDCFQRNRHLVHMVLLCCTHVFYNQTLKPATLIDSALDVFLCFVQ 1103
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.4 bits (53), Expect = 2.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 234 LAECPIIHMKSTMGPPQ 284
LA CPI+ + +T+G PQ
Sbjct: 884 LAPCPIVALSATVGNPQ 900
>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 2.3
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 24 FEQSW*I-PWSSLPPGVHDAED**SQGNH*VPNEEGVV 134
F + W I P+ SLP G H +E PN+EG V
Sbjct: 36 FPKEWSILPFLSLPDGAHSSEKDFVYFTLPFPNDEGTV 73
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 3.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 236 QCFLSSDTRKLMERCTF*ASSSGVMSTWPTATERHNT 126
+CF SD +KL +RC SS WP + ++T
Sbjct: 143 KCFHRSDVQKLSKRCDILFSSE-----WPEDVQENST 174
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 24.6 bits (51), Expect = 4.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 166 TPDELAQNVHLSINFLVSLL 225
TPD LA+N LSI F+ + L
Sbjct: 645 TPDLLAKNKELSIGFVTATL 664
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 24.2 bits (50), Expect = 5.4
Identities = 11/50 (22%), Positives = 22/50 (44%)
Frame = +1
Query: 169 PDELAQNVHLSINFLVSLLKKHWQNVRSFI*NQRWDHPRDCTNLTQ*ILW 318
PD+ + VH+ + +V L ++ SF+ RW + + + W
Sbjct: 299 PDDSNEEVHIYLEVIVDFLLSSVSDIDSFV---RWSAAKGLAKIISRLPW 345
>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 178
Score = 24.2 bits (50), Expect = 5.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 193 AHSEQAHQESCPHGQLLQKDTTP 125
++ EQ HQ S HG +TP
Sbjct: 88 SNEEQGHQRSASHGSTSSATSTP 110
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +3
Query: 213 CVTAQETLAECPIIHMKSTMGPPQRLY*FNTIDFMA 320
C TA E +A I+ +GP Q N + F A
Sbjct: 306 CFTANEVIAYMRIMRPGMVVGPQQHWLHINQVHFRA 341
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 23.8 bits (49), Expect = 7.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 38 VNSLVFSPTRSP*RRRLMKSREPLSSK 118
VN+ ++P R+P +R S PLSS+
Sbjct: 341 VNASTYNPPRAPLQRTPSGSLTPLSSR 367
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 23.8 bits (49), Expect = 7.1
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 43 FPGLLSHQESMTQKIDEVKGTI-KFQMKKVLCLSVAVGHVD 162
F +++ S +DE++ + K + ++LC VA GH+D
Sbjct: 1755 FQPVIAALVSYINSLDEIQFSRGKSEFYQLLCAIVACGHID 1795
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 23.4 bits (48), Expect = 9.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 204 QLPCVTAQETLAECP 248
Q C T ET+A+CP
Sbjct: 66 QFKCQTCGETMADCP 80
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 193 HLSINFLVSLLKKHWQNVRSFI*NQR 270
H +N L+ LLK+H+++ NQR
Sbjct: 448 HPKMNHLLELLKEHFKDTSEGYQNQR 473
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,589,375
Number of Sequences: 5004
Number of extensions: 31468
Number of successful extensions: 97
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -