Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10798
(335 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 110 2e-25
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 110 2e-25
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 109 7e-25
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 105 9e-24
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 41 2e-04
04_04_0401 - 24946801-24947562 36 0.011
02_05_1241 - 35189111-35189389,35189604-35189711,35189982-351907... 30 0.53
09_06_0364 + 22554082-22554225,22554306-22554520,22554671-225547... 29 1.2
09_02_0251 - 6282420-6282526,6282642-6283104,6283223-6283289,628... 29 1.2
02_04_0613 + 24392238-24393550,24394585-24394687,24395153-24395257 28 1.6
09_06_0028 + 20328599-20328821,20330659-20330735,20330806-203309... 28 2.2
08_01_0077 + 546473-546512,546739-547013,547772-547885,548002-55... 27 3.8
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 27 3.8
03_01_0632 - 4647271-4648704 27 5.0
11_01_0455 + 3517281-3519798,3519888-3520261 26 8.7
03_06_0434 + 33894664-33895173 26 8.7
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265... 26 8.7
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 110 bits (265), Expect = 2e-25
Identities = 50/83 (60%), Positives = 66/83 (79%)
Frame = +1
Query: 1 IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDEL 180
IPRLLGPG KFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++
Sbjct: 137 IPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQI 191
Query: 181 AQNVHLSINFLVSLLKKHWQNVR 249
QN+ +S+NFLVSLLKK+WQNVR
Sbjct: 192 QQNIQMSVNFLVSLLKKNWQNVR 214
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 110 bits (265), Expect = 2e-25
Identities = 50/83 (60%), Positives = 66/83 (79%)
Frame = +1
Query: 1 IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDEL 180
IPRLLGPG KFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++
Sbjct: 119 IPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQI 173
Query: 181 AQNVHLSINFLVSLLKKHWQNVR 249
QN+ +S+NFLVSLLKK+WQNVR
Sbjct: 174 QQNIQMSVNFLVSLLKKNWQNVR 196
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 109 bits (261), Expect = 7e-25
Identities = 51/83 (61%), Positives = 65/83 (78%)
Frame = +1
Query: 1 IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDEL 180
IPRLLGPG KFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG+ M ++
Sbjct: 119 IPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNCAMEEKQI 173
Query: 181 AQNVHLSINFLVSLLKKHWQNVR 249
QNV +S+NFLVSLLKK+WQNVR
Sbjct: 174 FQNVQMSVNFLVSLLKKNWQNVR 196
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 105 bits (252), Expect = 9e-24
Identities = 56/105 (53%), Positives = 70/105 (66%), Gaps = 22/105 (20%)
Frame = +1
Query: 1 IPRLLGPGLNKAGK----------------------FPGLLSHQESMTQKIDEVKGTIKF 114
IPRLLGPGLNKAGK FP L++HQES+ K++E K T+KF
Sbjct: 119 IPRLLGPGLNKAGKILLVYGRSILKSSYIIVSKRGKFPTLVTHQESLESKVNETKATVKF 178
Query: 115 QMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVR 249
Q+KKVLC+ VAVG+ M ++ QNV +S+NFLVSLLKK+WQNVR
Sbjct: 179 QLKKVLCMGVAVGNCAMEEKQIFQNVQMSVNFLVSLLKKNWQNVR 223
>05_07_0079 -
27539389-27539892,27540059-27540343,27540453-27540550,
27540951-27541042,27541155-27541259,27541360-27541567,
27542469-27542472,27542742-27542765,27545025-27546266
Length = 853
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 IPRLLGPGLNKAGKFPGLLSHQES-MTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 177
+PR+LG K P + + +++ +V + ++ C + VG +DM ++
Sbjct: 150 LPRVLGKAFYSTKKAPVAVDFARTGWLEQVRKVMNSTFLYLRTGTCSGIKVGRLDMKEED 209
Query: 178 LAQNVHLSINFLVSLLKKHWQNVRS 252
+NV ++ V + K W NVRS
Sbjct: 210 TVENVMAAVEAAVENVPKKWANVRS 234
>04_04_0401 - 24946801-24947562
Length = 253
Score = 35.5 bits (78), Expect = 0.011
Identities = 17/79 (21%), Positives = 37/79 (46%)
Frame = +1
Query: 16 GPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVH 195
G KA + + ++ + E ++ +++ C +V VGH M +E +NV
Sbjct: 113 GKAAAKAARVVPVDLADQAWAESAREAARRVELRVEGGTCRAVRVGHAAMAREEAVENVV 172
Query: 196 LSINFLVSLLKKHWQNVRS 252
++ + + + W+NVR+
Sbjct: 173 AAVEAAAACVPRKWRNVRA 191
>02_05_1241 -
35189111-35189389,35189604-35189711,35189982-35190713,
35190811-35191230,35191484-35191565,35191719-35192002,
35193104-35193256
Length = 685
Score = 29.9 bits (64), Expect = 0.53
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 178 LAQNVHLSINFLVSLLKKH 234
+ + VHLS+NF++ L+KKH
Sbjct: 302 IVEGVHLSLNFVMGLMKKH 320
>09_06_0364 +
22554082-22554225,22554306-22554520,22554671-22554752,
22554976-22555371,22555553-22556293,22556420-22556551,
22556981-22557367
Length = 698
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 160 DMTPDELAQNVHLSINFLVSLLKKH 234
D + + VHLS+NF++ L++KH
Sbjct: 262 DRKESVVVEGVHLSLNFVMGLMRKH 286
>09_02_0251 -
6282420-6282526,6282642-6283104,6283223-6283289,
6283536-6283808,6284096-6284907,6285402-6285479,
6285586-6285636,6285737-6285817,6285903-6285982,
6288481-6288652
Length = 727
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 127 PSSFGT*WFP*LHQSSASWTPGGREDQGIYQLCSNR 20
P F WFP +H ++ S R Q I+ +C N+
Sbjct: 493 PVYFKNDWFPFIHSTTLSEGTNARRRQDIFGVCCNK 528
>02_04_0613 + 24392238-24393550,24394585-24394687,24395153-24395257
Length = 506
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +3
Query: 183 SECASFHQLP--CVTAQETLAECPIIHMKSTMGPPQRL 290
+ECASFH P C A T CP + P R+
Sbjct: 386 AECASFHSQPKACPAASATHVACPAGAANAAAAPADRV 423
>09_06_0028 +
20328599-20328821,20330659-20330735,20330806-20330968,
20331095-20331156,20331250-20331328,20331818-20331898,
20332068-20332216,20332254-20332319,20332495-20332643,
20332722-20332761,20333001-20333015
Length = 367
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -1
Query: 323 PGHKIYCVKLVQSLGWSHR*FHMNDRTFCQCFLSSDTRKLMERCTF*ASSSGVM 162
PG + G ++R + + T C CFL D RC F AS+ V+
Sbjct: 312 PGRCYVTESPATTTGHTYRLVALLETTICMCFLEMDKLLHRLRCIFVASAGHVV 365
>08_01_0077 +
546473-546512,546739-547013,547772-547885,548002-550245
Length = 890
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -3
Query: 159 HMANCYRKTQHLLHLELNGSLDFINLLRHGLLVGEKTREFT 37
H+ N Y K +H H LN L LL K REF+
Sbjct: 837 HILNIYAKARHFSHNVLNMLLGLTGTGSSQLLSQPKAREFS 877
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 192 ASFHQLPCVTAQETLAECPIIHMKSTMGPPQRLY 293
A HQ+P + Q A+ P+ S PPQ +Y
Sbjct: 24 AQMHQMPMLPQQRGYAQMPMPGPPSQPPPPQAMY 57
>03_01_0632 - 4647271-4648704
Length = 477
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 213 KEVDGKMHILSKLIRSHVHMANCYRKTQHLLHLELNGSLDFINLL 79
KEV+G++H +L+ H A R LH+ L D + L
Sbjct: 186 KEVNGELHTTRQLLARSQHEAETARLESDRLHVSLKRKDDKLRAL 230
>11_01_0455 + 3517281-3519798,3519888-3520261
Length = 963
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 22 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSV 144
G N GKFP L +S+ + + GTI + + L+V
Sbjct: 103 GNNLVGKFPQLPHRLQSLQLSYNHLSGTIPASLANITRLNV 143
>03_06_0434 + 33894664-33895173
Length = 169
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/31 (32%), Positives = 12/31 (38%)
Frame = -2
Query: 217 TQGS*WKDAHSEQAHQESCPHGQLLQKDTTP 125
T G W + H+ CPHG L P
Sbjct: 110 TMGLRWPTPQRREQHKRLCPHGYRLPGPAAP 140
>01_06_0529 -
30026101-30026277,30026363-30026438,30026509-30026570,
30026882-30027031,30027213-30027338,30028096-30028305,
30028870-30028938,30029024-30029080,30029131-30029277,
30029358-30029542,30029623-30029698,30029796-30029918,
30030395-30030410,30031743-30032745,30033521-30033789,
30034297-30034415
Length = 954
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 1 IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 111
+ +LG N K+ LL + + KIDE++ ++K
Sbjct: 292 LQHMLGCLKNHVEKYAALLDQHDDLHDKIDELEASLK 328
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,567,752
Number of Sequences: 37544
Number of extensions: 216447
Number of successful extensions: 551
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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