Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10798
         (335 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4)               72   1e-13
SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.54 
SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.71 
SB_42576| Best HMM Match : VlpA_repeat (HMM E-Value=8.1)               29   0.71 
SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)                 28   1.6  
SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.2  
SB_47584| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.0  
SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_49035| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_45400| Best HMM Match : MAM (HMM E-Value=0)                         26   6.6  
SB_2427| Best HMM Match : zf-C3HC4 (HMM E-Value=0.3)                   26   8.7  
SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)               26   8.7  
SB_55145| Best HMM Match : Kelch_1 (HMM E-Value=0)                     26   8.7  
SB_12879| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  

>SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4)
          Length = 81

 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 30/43 (69%), Positives = 38/43 (88%)
 Frame = +1

Query: 1   IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKV 129
           IPR+LGPGLNKAGKFP  ++H E+M QKI++V+ TIKFQMKK+
Sbjct: 35  IPRILGPGLNKAGKFPTPINHNENMVQKIEDVRSTIKFQMKKI 77


>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +1

Query: 52  LLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKK 231
           L+  ++   ++++ +K  +    KKV   S AV  +  TPD ++  V   +N L SL KK
Sbjct: 629 LIGLKDGGDKELNRLKEELTQVSKKV---SSAVSEMSDTPDNVSNQVEKVVNELKSLKKK 685

Query: 232 H 234
           H
Sbjct: 686 H 686


>SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 223 AVTQGS*WKDAHSEQAHQESCPH 155
           AV+    WK  H+ Q  QESCPH
Sbjct: 103 AVSNPCFWKWIHAHQTAQESCPH 125


>SB_42576| Best HMM Match : VlpA_repeat (HMM E-Value=8.1)
          Length = 325

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 1   IPRLLGPGLNKAGKFPGLLS--HQESMTQKIDEVKGTIKFQMKKV 129
           IP    P  +K  K+PG ++  HQ     +  E  GTI   MK +
Sbjct: 31  IPGYYQPCTSKTSKYPGTMNLVHQRHRNTRTSEYPGTINLVMKDI 75


>SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)
          Length = 1286

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 200 PSTSLCHCSRNTGRMSD 250
           PS   CHC  N GRM D
Sbjct: 526 PSDPTCHCPSNNGRMKD 542


>SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 183 SKLIRSHVHMANCYRKTQHLLHLELNGSLDFINLLR-HGL-LVGEKTREFTS 34
           +K I   +H+ + YR   H++HL    +LD I   R  G+ L  E T  + S
Sbjct: 169 NKAIEMVIHLCDHYRVPCHIVHLSSGSALDSIRSARSSGIPLTVETTHHYLS 220


>SB_47584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 206 TSLCHCSRNTGRMSDHSYEINDGTTP 283
           TS C   RN+  +S+ SYE    TTP
Sbjct: 59  TSSCSPDRNSPGLSEGSYEAGPSTTP 84


>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = +1

Query: 139 SVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRS 252
           ++ VGH      E+  N+  +++ L  ++ + W N++S
Sbjct: 322 AMKVGHTGQEKKEVISNIVEAVSGLAKIIPRGWNNIQS 359


>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 650

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = -1

Query: 263 FHMNDRTFCQC---FLSSDTRKLMERCTF*ASSSGVMSTWPTATERHNTFFIWNLMVPLT 93
           F  +D TF      FLSSDT  L    TF +S +  +S+  T     +TF   +     +
Sbjct: 262 FLSSDTTFLSSDTIFLSSDTTLLSSDSTFLSSDTTFLSSDTTLLSSDSTFLSSDTTFSSS 321

Query: 92  SSIFCVMDS 66
            S F   D+
Sbjct: 322 DSTFVSSDT 330


>SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1808

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +1

Query: 46   PGLLSHQESMTQKIDEVKGTIKFQMKKVLCLS 141
            P L+ + +S+T KIDE++  +     +V+C++
Sbjct: 917  PFLICNAQSLTNKIDELECVVLSNSARVVCVT 948


>SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -1

Query: 254 NDRTFCQCFLSSDTRKLMERCTF*ASSSGVMSTWPTATERHNTFFIWNLMVPLT-SSIFC 78
           ND    Q FLSS + KL    T    ++ +MST    T  H  F +    VP T  S+  
Sbjct: 522 NDENCVQAFLSSVSNKLYTIDTKDEETASLMSTNAILTLGHVAFMMHE--VPDTVESVLT 579

Query: 77  VMDSWWERRPGNLPAL 30
           +M   +   P +L  L
Sbjct: 580 IMQHRFCHPPSSLDPL 595


>SB_49035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -1

Query: 227 LSSDTRKLMERCTF*ASSSGVMSTWPTATERHNTFFIWNLMVPLTSSIFCVMDS 66
           L +D+  L+  CT   + S +  T  T     +T  + +  +P+T S   V DS
Sbjct: 95  LVTDSTILVTDCTILVTDSTIPVTDSTIPVTDSTILVTDSTIPVTDSTILVTDS 148


>SB_45400| Best HMM Match : MAM (HMM E-Value=0)
          Length = 257

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 191 CIFPSTSLCHCSRNTGRMSDHSYEINDGTTP 283
           C F +  +CH + +      +++E   GTTP
Sbjct: 5   CEFDADGMCHWTNSESNPPHYNWERKQGTTP 35


>SB_2427| Best HMM Match : zf-C3HC4 (HMM E-Value=0.3)
          Length = 378

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 202 WKDAHSEQAHQESCPHGQLLQKDTT 128
           WK  H+ +  + +CPH + +  DTT
Sbjct: 62  WKWIHTHRTERITCPHCRYVFPDTT 86


>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
          Length = 654

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 165 HVHMANCYRKTQHLLHLELNGSLDFINLLRHGLLVGEKTR 46
           H+H     R +Q L+H  +   +D+ N L +GL   + T+
Sbjct: 470 HLHNIRRIRTSQTLVHAFVTSRVDYSNSLLYGLPAYQLTK 509


>SB_55145| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 625

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/42 (23%), Positives = 26/42 (61%)
 Frame = -3

Query: 210 EVDGKMHILSKLIRSHVHMANCYRKTQHLLHLELNGSLDFIN 85
           ++D  ++   + ++ H+H++NC    +   + EL+G ++FI+
Sbjct: 115 QLDPVVYACCEFMKRHLHVSNC---LEMRAYAELHGCIEFIH 153


>SB_12879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = +1

Query: 4   PR-LLGPGLNKAGKFPGLL-SHQESMTQKIDEVKGTIKFQMKKVLCLSVA--VGHVDMTP 171
           PR ++   + +  + P ++ S+  S+  KIDE++         V+C++      H+    
Sbjct: 165 PRAIVEKNIGRVARIPAIVVSNVRSLASKIDELECVSSINSADVICVTETWLTDHIRNNR 224

Query: 172 DELAQNVHLSINFLV 216
           +  A  + + +NF +
Sbjct: 225 ETFAGGIAVYLNFTI 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,053,505
Number of Sequences: 59808
Number of extensions: 250324
Number of successful extensions: 668
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)