Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10798
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   136   3e-33
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   136   3e-33
AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   136   3e-33
Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical p...    32   0.089
Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical pr...    31   0.16 
AF067949-5|AAC19234.1|  109|Caenorhabditis elegans Synaptobrevin...    31   0.21 
AF003282-1|AAB61235.1|  109|Caenorhabditis elegans SNB-1 protein.      31   0.21 
AF003281-1|AAB61234.1|  109|Caenorhabditis elegans SNB-1 protein.      31   0.21 
Z82283-2|CAB05284.1|  128|Caenorhabditis elegans Hypothetical pr...    26   7.7  
Z81061-5|CAB02935.4|  695|Caenorhabditis elegans Hypothetical pr...    26   7.7  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    26   7.7  
AC006827-3|AAF60882.1|  269|Caenorhabditis elegans Hypothetical ...    26   7.7  

>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  136 bits (330), Expect = 3e-33
 Identities = 61/84 (72%), Positives = 73/84 (86%)
 Frame = +1

Query: 1   IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDEL 180
           IPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +EL
Sbjct: 89  IPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEEL 148

Query: 181 AQNVHLSINFLVSLLKKHWQNVRS 252
             N+ LSINFLVSLLKK+WQNVRS
Sbjct: 149 VSNISLSINFLVSLLKKNWQNVRS 172


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  136 bits (330), Expect = 3e-33
 Identities = 61/84 (72%), Positives = 73/84 (86%)
 Frame = +1

Query: 1   IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDEL 180
           IPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +EL
Sbjct: 58  IPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEEL 117

Query: 181 AQNVHLSINFLVSLLKKHWQNVRS 252
             N+ LSINFLVSLLKK+WQNVRS
Sbjct: 118 VSNISLSINFLVSLLKKNWQNVRS 141


>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  136 bits (330), Expect = 3e-33
 Identities = 61/84 (72%), Positives = 73/84 (86%)
 Frame = +1

Query: 1   IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDEL 180
           IPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +EL
Sbjct: 119 IPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEEL 178

Query: 181 AQNVHLSINFLVSLLKKHWQNVRS 252
             N+ LSINFLVSLLKK+WQNVRS
Sbjct: 179 VSNISLSINFLVSLLKKNWQNVRS 202


>Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical
           protein F53F4.11 protein.
          Length = 543

 Score = 32.3 bits (70), Expect = 0.089
 Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +1

Query: 1   IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLS-VAVGHVDMTPDE 177
           +   LG    +A K P    +Q+ ++  I+    T+ + +++ +  S V VGH+  +  +
Sbjct: 317 VKSFLGKEFYRAHKCPLPFVYQKPISTAIENALRTVVYPLRRYMVRSCVNVGHLGQSSAD 376

Query: 178 LAQNVHLSINFLVSLLKKHWQNVRS 252
           L +N+   +  + S     + N+RS
Sbjct: 377 LKENIDTVLEKIASKCPGGFANIRS 401


>Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical
           protein R10E8.3 protein.
          Length = 522

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = -3

Query: 204 DGKMHILSKLIRSHVHMANCYRKTQHLLHLELNGS--LDFINLLRHGLLVGEKTREFTSF 31
           D + + L K+    + + + +R    + HLEL GS  L+FI LL    L  +K R+ T F
Sbjct: 329 DFERYTLEKMQNLGIFLGS-FRNKISMAHLELKGSSELEFIQLL--DCLDAKKLRKLTIF 385

Query: 30  VQTGTQQTGN 1
              G    GN
Sbjct: 386 ATVGDVNNGN 395


>AF067949-5|AAC19234.1|  109|Caenorhabditis elegans Synaptobrevin
           related protein 1 protein.
          Length = 109

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +1

Query: 22  GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 201
           G ++ G  P     Q++  Q +DEV G +K  ++KVL     +  +D   D L +     
Sbjct: 11  GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69

Query: 202 INFLVSLLKKH-WQNVRSFI 258
                +L +K+ W+N++  I
Sbjct: 70  EKSAATLKRKYWWKNIKMMI 89


>AF003282-1|AAB61235.1|  109|Caenorhabditis elegans SNB-1 protein.
          Length = 109

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +1

Query: 22  GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 201
           G ++ G  P     Q++  Q +DEV G +K  ++KVL     +  +D   D L +     
Sbjct: 11  GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69

Query: 202 INFLVSLLKKH-WQNVRSFI 258
                +L +K+ W+N++  I
Sbjct: 70  EKSAATLKRKYWWKNIKMMI 89


>AF003281-1|AAB61234.1|  109|Caenorhabditis elegans SNB-1 protein.
          Length = 109

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +1

Query: 22  GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 201
           G ++ G  P     Q++  Q +DEV G +K  ++KVL     +  +D   D L +     
Sbjct: 11  GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69

Query: 202 INFLVSLLKKH-WQNVRSFI 258
                +L +K+ W+N++  I
Sbjct: 70  EKSAATLKRKYWWKNIKMMI 89


>Z82283-2|CAB05284.1|  128|Caenorhabditis elegans Hypothetical
           protein T23G4.2 protein.
          Length = 128

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/46 (26%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +1

Query: 76  TQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELA-QNVHLSINF 210
           ++ + +V G +  +MKK + L+ +V H+++  D++  Q  +++I F
Sbjct: 14  SETVLDVLGNVSEKMKKGIELARSVAHLELCQDKITFQRRYVAIEF 59


>Z81061-5|CAB02935.4|  695|Caenorhabditis elegans Hypothetical
           protein F14H8.6 protein.
          Length = 695

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 176 SSGVMSTWPTATERHNTFFIWNLMVPLTS 90
           SSG MS   T  E  NTF++W  +V L +
Sbjct: 99  SSGFMSF--TVDEHSNTFYLWTGLVSLVA 125


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
           protein C27B7.4 protein.
          Length = 1274

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -3

Query: 198 KMHILSKLIRSHVHMANCYRKTQHLLHLELNGSLDFINLLRHGLLVGEKTREF 40
           + H+L +L++  V      R+T HLL   L  S +++ LLR   +  +  R F
Sbjct: 547 RTHVLVELVKGFVQ-----RRTHHLLKKILPESKEYVLLLRKSQIQRQLYRNF 594


>AC006827-3|AAF60882.1|  269|Caenorhabditis elegans Hypothetical
           protein Y81B9A.2 protein.
          Length = 269

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 10  LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK--FQMKKVLCLSVAVGHVDMT 168
           L  P +    K PG L    ++  K+  +KG++K  F   K+L  S A   VD++
Sbjct: 54  LAAPPIKPMQKEPGTLLPPRAVVYKLPAIKGSMKDAFSAHKLLKKSYAKPIVDIS 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,953,737
Number of Sequences: 27780
Number of extensions: 187980
Number of successful extensions: 447
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)