Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10798
(335 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 130 3e-31
At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 130 3e-31
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 129 4e-31
At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 129 4e-31
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t... 44 3e-05
At3g58660.1 68416.m06538 60S ribosomal protein-related contains ... 42 1e-04
At1g06380.1 68414.m00674 ribosomal protein-related similar to PB... 39 7e-04
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta... 30 0.44
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 29 0.58
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 29 0.58
At2g42710.1 68415.m05289 ribosomal protein L1 family protein 29 1.0
At1g48980.1 68414.m05491 hypothetical protein 24 1.4
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34... 26 5.4
At5g14210.1 68418.m01660 leucine-rich repeat transmembrane prote... 26 7.2
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 26 7.2
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 26 7.2
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 26 7.2
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 26 7.2
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 26 7.2
At5g01140.1 68418.m00018 hypothetical protein contains Pfam prof... 25 9.5
At4g23840.1 68417.m03428 leucine-rich repeat family protein 25 9.5
At3g26770.1 68416.m03348 short-chain dehydrogenase/reductase (SD... 25 9.5
At1g55790.1 68414.m06388 hypothetical protein 25 9.5
>At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 130 bits (313), Expect = 3e-31
Identities = 58/83 (69%), Positives = 71/83 (85%)
Frame = +1
Query: 1 IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDEL 180
IPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M +L
Sbjct: 119 IPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQL 178
Query: 181 AQNVHLSINFLVSLLKKHWQNVR 249
QNV +S+NFLVSLLKK+WQNVR
Sbjct: 179 FQNVQMSVNFLVSLLKKNWQNVR 201
Score = 28.3 bits (60), Expect = 1.3
Identities = 9/14 (64%), Positives = 14/14 (100%)
Frame = +3
Query: 252 IHMKSTMGPPQRLY 293
+++KSTMGPPQR++
Sbjct: 203 LYLKSTMGPPQRIF 216
>At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 130 bits (313), Expect = 3e-31
Identities = 58/83 (69%), Positives = 71/83 (85%)
Frame = +1
Query: 1 IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDEL 180
IPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M +L
Sbjct: 119 IPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQL 178
Query: 181 AQNVHLSINFLVSLLKKHWQNVR 249
QNV +S+NFLVSLLKK+WQNVR
Sbjct: 179 FQNVQMSVNFLVSLLKKNWQNVR 201
Score = 28.3 bits (60), Expect = 1.3
Identities = 9/14 (64%), Positives = 14/14 (100%)
Frame = +3
Query: 252 IHMKSTMGPPQRLY 293
+++KSTMGPPQR++
Sbjct: 203 LYLKSTMGPPQRIF 216
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 129 bits (312), Expect = 4e-31
Identities = 57/83 (68%), Positives = 71/83 (85%)
Frame = +1
Query: 1 IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDEL 180
IPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++
Sbjct: 120 IPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQI 179
Query: 181 AQNVHLSINFLVSLLKKHWQNVR 249
QNV +S+NFLVSLLKK+WQNVR
Sbjct: 180 FQNVQMSVNFLVSLLKKNWQNVR 202
Score = 25.8 bits (54), Expect = 7.2
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +3
Query: 252 IHMKSTMGPPQRLY 293
+++KSTMGPP R++
Sbjct: 204 LYLKSTMGPPNRVF 217
>At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA)
similar to 60S ribosomal protein L10A GB:AAC73045
GI:3860277 from [Arabidopsis thaliana]
Length = 216
Score = 129 bits (312), Expect = 4e-31
Identities = 57/83 (68%), Positives = 71/83 (85%)
Frame = +1
Query: 1 IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDEL 180
IPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++
Sbjct: 119 IPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQI 178
Query: 181 AQNVHLSINFLVSLLKKHWQNVR 249
QNV +S+NFLVSLLKK+WQNVR
Sbjct: 179 FQNVQMSVNFLVSLLKKNWQNVR 201
Score = 28.3 bits (60), Expect = 1.3
Identities = 9/14 (64%), Positives = 14/14 (100%)
Frame = +3
Query: 252 IHMKSTMGPPQRLY 293
+++KSTMGPPQR++
Sbjct: 203 LYLKSTMGPPQRIF 216
>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
PBK1 protein (GI:3668141) [Homo sapiens]; weak
similarity to 60S ribosomal protein L10a.
(Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
Length = 372
Score = 44.0 bits (99), Expect = 3e-05
Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 IPRLLGPGLNKAGKFPGLLSHQE-SMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 177
+P+L+G ++ K P + + + ++I++ G F M+ C ++ V + M D+
Sbjct: 141 LPKLIGKKFFQSKKTPVAIDLKHMNWKEQIEKACGAAMFFMRTGSCSAIKVAKLSMESDD 200
Query: 178 LAQNVHLSINFLVSLLKKHWQNVRS 252
+ +NV ++N +V +L W+ +RS
Sbjct: 201 IVENVTATLNGVVDVLPSRWKYIRS 225
>At3g58660.1 68416.m06538 60S ribosomal protein-related contains
weak similarity to 60S ribosomal protein L10A (CSA-19)
(NEDD-6) (Swiss-Prot:P53026) [Mus musculus]
Length = 446
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 IPRLLGPGLNKAGKFPGLLS-HQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 177
+PR++G + K P L + +I++ G+ F ++ C + VG + M E
Sbjct: 161 LPRVIGKKFFTSKKIPVALDLKHRNWKHQIEKACGSAMFFIRTGTCSVIKVGKLSMDICE 220
Query: 178 LAQNVHLSINFLVSLLKKHWQNVRS 252
+ +NV ++N LV L W VRS
Sbjct: 221 ITENVMATLNGLVEFLPNKWTYVRS 245
>At1g06380.1 68414.m00674 ribosomal protein-related similar to PBK1
protein (GI:3668141) {Homo sapiens}; weakly similar to
60S ribosomal protein L10a. (SP:Q963B6) [Fall armyworm]
{Spodoptera frugiperda}
Length = 254
Score = 39.1 bits (87), Expect = 7e-04
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 IPRLLGPGLNKAGKFPGLLSHQE-SMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 177
+P+LLG K K P ++ + S ++I++ + F + C V V + M +E
Sbjct: 152 LPKLLGKEFVKKNKTPIAINLRHGSWKEQIEKACESALFFVGTGTCSVVKVAKLSMGRNE 211
Query: 178 LAQNVHLSINFLVSLLKKHWQNVRSF 255
+A+NV ++N + L+ W+NV+ F
Sbjct: 212 IAENVVAAMNGIGDLVPGRWKNVKLF 237
>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 738
Score = 29.9 bits (64), Expect = 0.44
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 178 LAQNVHLSINFLVSLLKKH 234
+ + VHLS+NF++ L+KKH
Sbjct: 322 IVEGVHLSLNFVMGLMKKH 340
>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 698
Score = 29.5 bits (63), Expect = 0.58
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 178 LAQNVHLSINFLVSLLKKH 234
+ + VHLS+NF++ L+KKH
Sbjct: 279 VVEGVHLSLNFVMGLMKKH 297
>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 717
Score = 29.5 bits (63), Expect = 0.58
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 178 LAQNVHLSINFLVSLLKKH 234
+ + VHLS+NF++ L+KKH
Sbjct: 298 VVEGVHLSLNFVMGLMKKH 316
>At2g42710.1 68415.m05289 ribosomal protein L1 family protein
Length = 415
Score = 28.7 bits (61), Expect = 1.0
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +1
Query: 25 LNKAGKFPGLL--SHQESMTQKIDEVK-GTIKFQMKKVLCLSVAVGHVDMTPDELAQNVH 195
LN G P S + +T+ + + K G KF+M K L V +G + + + L +NV
Sbjct: 299 LNNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSEEALRENVG 358
Query: 196 LSINFLV 216
+N L+
Sbjct: 359 AFMNALL 365
>At1g48980.1 68414.m05491 hypothetical protein
Length = 264
Score = 24.2 bits (50), Expect(2) = 1.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 192 HILSKLIRSHVHMANCYRKTQHLLHLELNGSLDFINLL 79
H LS+ R+H+ N RK + ++NG L +N+L
Sbjct: 66 HKLSRKQRTHIRAINVKRKRDFVCLEKVNGEL--VNIL 101
Score = 22.6 bits (46), Expect(2) = 1.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 231 FLEQ*HKEVDGKMHILSKLIRS 166
F+ Q E+ K+++LSK IRS
Sbjct: 6 FIRQSELEIASKVNLLSKRIRS 27
>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
kDa outer mitochondrial membrane protein porin
(Voltage-dependent anion-selective channel protein)
(VDAC) {Solanum tuberosum}; contains Pfam profile
PF01459: Eukaryotic porin
Length = 276
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 186 ECASFHQLPCVTAQETLAECPIIHMKSTMGPP 281
E FH VTA L + P+I + +T+G P
Sbjct: 107 EVQYFHDHATVTAAAALKQNPLIDITATLGSP 138
>At5g14210.1 68418.m01660 leucine-rich repeat transmembrane protein
kinase, putative
Length = 812
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 216 HKEVDGKMHILSKLIRSHVHM 154
H E+ GK+ LSKL SH+HM
Sbjct: 222 HNEISGKLPDLSKL--SHLHM 240
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 155 WPTATERHNTFFIWN-LMVPLTSSIFC 78
WPT T R + F W+ + V ++ S C
Sbjct: 284 WPTTTSRRSLLFTWSCVFVVVSKSRLC 310
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 155 WPTATERHNTFFIWN-LMVPLTSSIFC 78
WPT T R + F W+ + V ++ S C
Sbjct: 436 WPTTTSRRSLLFTWSCVFVVVSKSRLC 462
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 155 WPTATERHNTFFIWN-LMVPLTSSIFC 78
WPT T R + F W+ + V ++ S C
Sbjct: 360 WPTTTSRRSLLFTWSCVFVVVSKSRLC 386
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 155 WPTATERHNTFFIWN-LMVPLTSSIFC 78
WPT T R + F W+ + V ++ S C
Sbjct: 436 WPTTTSRRSLLFTWSCVFVVVSKSRLC 462
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 155 WPTATERHNTFFIWN-LMVPLTSSIFC 78
WPT T R + F W+ + V ++ S C
Sbjct: 360 WPTTTSRRSLLFTWSCVFVVVSKSRLC 386
>At5g01140.1 68418.m00018 hypothetical protein contains Pfam profile
PF05056: Protein of unknown function (DUF674)
Length = 473
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 176 SLLRMCIFPSTSLCHCSR-NTGRMSDHSYEIND 271
S+ RMC +TSLC C + +S YE ND
Sbjct: 106 SICRMCSNFNTSLCKCGKLMNEEISFLEYEEND 138
>At4g23840.1 68417.m03428 leucine-rich repeat family protein
Length = 597
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 184 EQAHQESCPHGQLLQKDTTPSSFG 113
E A S QLL + +TP SFG
Sbjct: 513 EHADSSSLDQNQLLPRSSTPQSFG 536
>At3g26770.1 68416.m03348 short-chain dehydrogenase/reductase (SDR)
family protein similar to sex determination protein
tasselseed 2 SP:P50160 from [Zea mays]
Length = 306
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 233 TGRMSDHSYEINDGTTPEIV 292
TG ++ HSY I+ TTP IV
Sbjct: 184 TGGLAPHSYTISKFTTPGIV 203
>At1g55790.1 68414.m06388 hypothetical protein
Length = 414
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 40 KFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 159
K P H+ + + + + GTI K+L LS GH+
Sbjct: 249 KQPVSFDHRYRLQTEFEAIAGTITLGKSKILWLSQEKGHL 288
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,506,017
Number of Sequences: 28952
Number of extensions: 174643
Number of successful extensions: 420
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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