Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10795
         (315 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              97   3e-21
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        36   0.005
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)                      27   3.2  
SB_86| Best HMM Match : PGK (HMM E-Value=0)                            27   4.2  
SB_33643| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.4  
SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  
SB_2072| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.8  
SB_5878| Best HMM Match : Tyrosinase (HMM E-Value=0.33)                25   9.8  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 97.1 bits (231), Expect = 3e-21
 Identities = 43/65 (66%), Positives = 55/65 (84%)
 Frame = +1

Query: 22  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 201
           M S +ELACVYSALIL DDDVA+T +KI T++KAA ++VEP+WPGLFAKAL+G N+ DLI
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI 60

Query: 202 TNIGS 216
            + G+
Sbjct: 61  LSAGA 65


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 201 DQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQDESR 55
           DQ+  I+ F+  G++ WP +  + S R + GG+ +      II  DESR
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQGGSAVLQ----IICIDESR 146


>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 210  DVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSY 88
            D+G +VT +      G  T   W+ +YS    D G+F T Y
Sbjct: 2100 DLG-RVTRVTGIATQGSPTGDKWVKLYSVEQSDDGHFFTEY 2139


>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
          Length = 2110

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 206  LVIRSRTLMPSKA-LANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE*TH 45
            L++ S  + P ++ LA  PGQ G+T+T   F+      PV    S+  +    TH
Sbjct: 1763 LIVPSPAIAPVQSQLATTPGQVGNTNT--LFRPASTMVPVQPAVSNETLHPAVTH 1815


>SB_86| Best HMM Match : PGK (HMM E-Value=0)
          Length = 445

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 127 PPLSRWWKFSHQLRQHHH 74
           PP  RWW++ H LRQ  H
Sbjct: 394 PP--RWWRYRHVLRQMGH 409


>SB_33643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +1

Query: 16  LKMVSKAELACVYSALILV 72
           L+M  KAE+A V+SAL+L+
Sbjct: 179 LRMEQKAEMALVFSALLLL 197


>SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 136 HLQPPLSRWWKFSHQLRQHHHPP 68
           H  PP S    F H L +HH PP
Sbjct: 62  HPPPPASS--SFPHSLHRHHPPP 82


>SB_2072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 169 LWRTDLANMALHLQPPLSRWWKFSHQ 92
           LW TDL + +   QPP  R W  +HQ
Sbjct: 116 LWHTDLLS-SRQRQPPPERNWYQAHQ 140


>SB_5878| Best HMM Match : Tyrosinase (HMM E-Value=0.33)
          Length = 292

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
 Frame = -3

Query: 247 LHQRPEQHPLQSRCW*SGHGH*CLPRLWRTDLANMAL---HLQPPLSRWWKFSHQLRQHH 77
           LH      P +   W  G G   L R +   L N       LQ P  R+  F  QLR  H
Sbjct: 147 LHMHVLDGPFREGSWTFGKGGKVLTRNFSGVLPNKVTVQRALQLPHKRFTDFEKQLRIFH 206

Query: 76  H 74
           H
Sbjct: 207 H 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,679,213
Number of Sequences: 59808
Number of extensions: 162605
Number of successful extensions: 366
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)