Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10795
(315 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)... 80 3e-16
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)... 80 3e-16
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative 80 4e-16
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)... 79 5e-16
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)... 79 5e-16
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C) 79 6e-16
At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co... 38 0.001
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 28 1.5
At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI, chlor... 27 2.0
At1g29120.2 68414.m03565 expressed protein 27 3.5
At1g29120.1 68414.m03564 expressed protein 27 3.5
At1g09575.1 68414.m01074 expressed protein contains Pfam domain,... 26 4.6
At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protei... 26 6.1
At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative... 26 6.1
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 26 6.1
At1g32600.1 68414.m04023 F-box family protein-related contains T... 26 6.1
At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu... 25 8.1
At2g31160.1 68415.m03804 expressed protein contains Pfam profile... 25 8.1
>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 80.2 bits (189), Expect = 3e-16
Identities = 35/66 (53%), Positives = 49/66 (74%)
Frame = +1
Query: 22 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 201
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 202 TNIGSG 219
N+G+G
Sbjct: 61 MNVGAG 66
>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 80.2 bits (189), Expect = 3e-16
Identities = 35/66 (53%), Positives = 49/66 (74%)
Frame = +1
Query: 22 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 201
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 202 TNIGSG 219
N+G+G
Sbjct: 61 MNVGAG 66
>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
Length = 111
Score = 79.8 bits (188), Expect = 4e-16
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +1
Query: 25 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 204
+S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK E N+ DLI
Sbjct: 1 MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60
Query: 205 NIGSG 219
N+G+G
Sbjct: 61 NVGAG 65
>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 79.4 bits (187), Expect = 5e-16
Identities = 35/66 (53%), Positives = 48/66 (72%)
Frame = +1
Query: 22 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 201
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 202 TNIGSG 219
N+G+G
Sbjct: 61 MNVGAG 66
>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 79.4 bits (187), Expect = 5e-16
Identities = 35/66 (53%), Positives = 48/66 (72%)
Frame = +1
Query: 22 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 201
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 202 TNIGSG 219
N+G+G
Sbjct: 61 MNVGAG 66
>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
Length = 113
Score = 79.0 bits (186), Expect = 6e-16
Identities = 35/66 (53%), Positives = 48/66 (72%)
Frame = +1
Query: 22 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 201
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60
Query: 202 TNIGSG 219
N+G+G
Sbjct: 61 MNVGAG 66
>At3g49460.1 68416.m05406 60S acidic ribosomal protein-related
contains weak similarity to Swiss-Prot:52855 60S acidic
ribosomal protein P1 (L12) [Zea mays]
Length = 46
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +1
Query: 25 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGL 159
++ ELAC Y+AL+L D VT +ST++K A +++E YWP L
Sbjct: 1 MATGELACTYAALLLHDH---VT---MSTLVKTANLNIESYWPSL 39
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 173 KALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 66
+ +N P + S TAA KM +I SP+T +S R
Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGSSGEIR 317
>At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI,
chloroplast, putative / Mg-protoporphyrin IX chelatase,
putative similar to SP|P161127 from Arabidopsis
thaliana, SP|P93162 from Glycine max, SP|O22436 from
Nicotiana tabacum; non-consensus AA donor splice site at
exon 1, TG acceptor splice site at exon 2
Length = 418
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 19 KMVSKAELACVYSALILVDDDVAVTGEKIS---TILKAAAVDVEPYWPGLFAKALEGI 183
K+ EL+ + + + +VD + T +++ I KA V+ + PGL AKA GI
Sbjct: 158 KVQKGEELSVIETKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 215
>At1g29120.2 68414.m03565 expressed protein
Length = 455
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 1 LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 144
LA S + S+ +A +YSA + DVAV+ S +L+ +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223
>At1g29120.1 68414.m03564 expressed protein
Length = 455
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 1 LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 144
LA S + S+ +A +YSA + DVAV+ S +L+ +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223
>At1g09575.1 68414.m01074 expressed protein contains Pfam domain,
PF04678: Protein of unknown function, DUF607
Length = 292
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -1
Query: 210 DVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQDE 61
DV T ++A QG G P ++++R D G L + +H D+
Sbjct: 78 DVVSYSTLLEASQGMGIARSPDEAHVFARVLDDAGVVLIFRDKVYLHPDK 127
>At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protein
contains Pfam profiles: PF02538 hydantoinase
B/oxoprolinase, PF01968 hydantoinase/oxoprolinase,
PF05378 hydantoinase/oxoprolinase N-terminal region
Length = 1266
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 162 EQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQDESR 55
EQ +P+ L+ + R GGN L G+ ++ + E R
Sbjct: 1161 EQRYPVLLHRFGLRENSGGNGLHKGGDGLVREIEFR 1196
>At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative
similar to glucose-6-phosphate isomerase [Spinacia
oleracea] GI:3413511; contains Pfam profile PF00342:
glucose-6-phosphate isomerase
Length = 613
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 154 GLFAKALEGINVRDLIT 204
GL AL+GINVR+++T
Sbjct: 316 GLLPAALQGINVREMLT 332
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/70 (20%), Positives = 30/70 (42%)
Frame = +1
Query: 13 KLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVR 192
K +++ ++ ++ V + V G+ + T A ++ P W + G+
Sbjct: 211 KDNIITAKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLESVPEWIAIVGSGYIGLEFS 270
Query: 193 DLITNIGSGV 222
D+ T +GS V
Sbjct: 271 DVYTALGSEV 280
>At1g32600.1 68414.m04023 F-box family protein-related contains
TIGRFAM TIGR01640 : F-box protein interaction domain;
identical to hypothetical protein GB:AAF25964 GI:6714268
from [Arabidopsis thaliana]
Length = 293
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +1
Query: 25 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVR 192
VS+ EL CV + VDD++ V +I + K A D +P W + E +++R
Sbjct: 186 VSRGEL-CVINHYPSVDDNLCVCRREIRSGKKIARWDSDP-WMNVAGNDDEPVDIR 239
>At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mutase
family protein similar to X4 protein GI:21386798, Y4
protein GI:21386800 from [Silene dioica]; contains Pfam
profiles PF00300: phosphoglycerate mutase family,
PF01535: PPR repeat
Length = 1053
Score = 25.4 bits (53), Expect = 8.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3
Query: 99 ENFHHLESGGCRC 137
+ FHH + GGC C
Sbjct: 1037 KRFHHFKDGGCSC 1049
>At2g31160.1 68415.m03804 expressed protein contains Pfam profile
PF04852: Protein of unknown function (DUF640)
Length = 219
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -2
Query: 197 RSRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE 54
++R + K RP STS+++A + F + TSS+T+++ E
Sbjct: 171 KARGVSYEKKKRKRPLPSSSTSSSSAVASHQQFQMLPGTSSTTQLKFE 218
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,148,838
Number of Sequences: 28952
Number of extensions: 121496
Number of successful extensions: 316
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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