Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10793
(413 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 71 4e-13
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 71 5e-13
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 56 1e-08
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771... 31 0.36
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 30 0.84
01_05_0634 + 23843152-23843272,23843441-23843628,23843876-238442... 30 0.84
07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592... 28 2.6
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 27 4.5
12_02_0219 + 15822050-15824896 27 5.9
03_05_0742 + 27310404-27310457,27311281-27311286,27311350-273114... 27 5.9
03_05_0559 - 25610474-25610951,25611149-25611890,25612355-256127... 27 5.9
02_05_0072 - 25598690-25598702,25598820-25599001,25599111-255992... 27 5.9
12_02_1263 + 27423411-27423464,27423985-27424104,27424200-274242... 27 7.8
02_03_0349 + 18010414-18014283 27 7.8
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 70.9 bits (166), Expect = 4e-13
Identities = 31/48 (64%), Positives = 41/48 (85%)
Frame = +3
Query: 120 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALSSL 263
+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA++ L
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDL 84
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 257 ELREKGLIKQVVQHHGQVIYTRAT 328
+L +GLI+ V H Q IYTRAT
Sbjct: 83 DLMTRGLIRMVSVHSSQQIYTRAT 106
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 70.5 bits (165), Expect = 5e-13
Identities = 31/48 (64%), Positives = 40/48 (83%)
Frame = +3
Query: 120 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALSSL 263
+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+ L
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAMKDL 84
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 257 ELREKGLIKQVVQHHGQVIYTRAT 328
+L ++GLI+ V H Q IYTRAT
Sbjct: 83 DLMDRGLIRMVSVHCSQQIYTRAT 106
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 55.6 bits (128), Expect = 1e-08
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +3
Query: 120 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLK 224
+NN VLFDK TY+KL EVP+YK ITP+V+SERL+
Sbjct: 971 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 257 ELREKGLIKQVVQHHGQVIYTRAT 328
+L +G I+ V H Q+IYTRAT
Sbjct: 1101 DLESRGAIRVVSVHSSQLIYTRAT 1124
>03_05_0586 -
25875703-25876332,25876426-25876713,25877064-25877194,
25877299-25877812
Length = 520
Score = 31.1 bits (67), Expect = 0.36
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 11 REGFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPGV 136
R G G + + E G+ +WR+ +EEE Q+K + E+ V
Sbjct: 345 RGGRGGESEERRRERGKGKWREEEEEEEEQQKGQEEEEEEQV 386
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 29.9 bits (64), Expect = 0.84
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 174 VPQYKLITPAVVSERLKVRGSLARRALSSLGKKVSSN 284
+P Y L A V +K+RG L SS GKK+S N
Sbjct: 1840 IPHYYLTVDARVDNLIKLRGELNPLQESSGGKKISIN 1876
>01_05_0634 +
23843152-23843272,23843441-23843628,23843876-23844205,
23844319-23844565,23844591-23844668,23844740-23845024,
23845139-23845225,23845365-23845415,23845625-23845761,
23845853-23846437
Length = 702
Score = 29.9 bits (64), Expect = 0.84
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = -2
Query: 343 WIIALGRTCVDHLPMVLDYLFDETFFPKLESALLAREPRTFNLSDTTAGVISLYCGTSLY 164
W++ LG TC + + V + DE + ++ ++ P+ + +D + V Y T
Sbjct: 83 WMVTLGHTCKEGISPVAER--DEIYLVAEDNKVIKITPKKLHTADPPSEVFFSYNATPGR 140
Query: 163 SFSYVGLS 140
S +GLS
Sbjct: 141 SEEIIGLS 148
>07_03_0044 -
12758606-12758676,12758765-12758860,12759197-12759299,
12759379-12759474,12759537-12759603,12759682-12759749,
12759898-12759973,12760112-12760197,12760285-12760361,
12761461-12761533,12761627-12761875,12761997-12762089,
12762218-12762292,12762661-12762716,12763473-12763513,
12763907-12764001,12764085-12764158,12765052-12765145,
12765484-12765519
Length = 541
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 174 VPQYKLITPAVVSERLKVRGSLARRALSSLGKKVSSN 284
+P Y L V +K+RG L SS GKK+S N
Sbjct: 334 IPHYYLTVDTRVDNLIKLRGELNPLQESSGGKKISIN 370
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 17 GFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPG 133
GFG S N+ +RWR + +++ Q Q ++PG
Sbjct: 427 GFGIAISANSMLVEYLRWRSRRNQQLAQTVDDGQRQEPG 465
>12_02_0219 + 15822050-15824896
Length = 948
Score = 27.1 bits (57), Expect = 5.9
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = -2
Query: 337 IALGRTCVDHLPMVLDYL---FD-ETFFPKLESALLAREPRTFNLSDTTA-GVISLYCGT 173
+ L T D + + YL FD E KL L +EP T N+ DTT +I +Y G+
Sbjct: 196 LPLNATVHDRIQSSIGYLGGVFDIEGHVDKLLEKLAGKEPMTVNIYDTTGESMIRMY-GS 254
Query: 172 SLYSFS 155
S S S
Sbjct: 255 SNESAS 260
>03_05_0742 +
27310404-27310457,27311281-27311286,27311350-27311469,
27311597-27311695,27311787-27311795,27311843-27311980,
27312084-27312218,27312308-27312517,27312592-27312798,
27312891-27313010,27313079-27313198,27313279-27313401,
27313501-27313605,27313764-27313908,27314658-27315148,
27315236-27315268,27315556-27315637,27315747-27315907,
27316021-27316206,27316294-27316476,27316573-27316751,
27317009-27317105
Length = 1000
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 223 FNLSDTTAGVISLYCGTSLYSFSYVGL--SNNTWLFNLSRTFPLDHFFFL 80
F ++ A +I++Y + S +G + WL+NL FPLD FL
Sbjct: 843 FFVAQLIATLIAVYANWAFTSIKGIGWGWAGIVWLYNLVFYFPLDIIKFL 892
>03_05_0559 -
25610474-25610951,25611149-25611890,25612355-25612744,
25613041-25613099,25613186-25613326,25613449-25613545,
25614999-25615185
Length = 697
Score = 27.1 bits (57), Expect = 5.9
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Frame = +1
Query: 70 AAKPRRRSGPKEKFVTS*TTRCCLINPRMRNCTRKXXXXXXXXXXXYLKD*RSEVPWREE 249
AA+PR + PKE + +R N R+ + +D R + + E+
Sbjct: 553 AARPRLAAKPKEPEPAN-QSRSSERNQRLSSSHGTDPSYKTSRSSSDRRDHRRSIDYVED 611
Query: 250 HSRA*GKRSHQTG------SPTPWAGDLHTCDQGR*SSR-INYDIS 366
H + H++ SP+P GD H+ + R SSR + Y+ S
Sbjct: 612 HRSSDYAEDHRSSKRMRASSPSPTGGDRHSRARSRYSSRKLTYEDS 657
>02_05_0072 -
25598690-25598702,25598820-25599001,25599111-25599269,
25599450-25599753,25600176-25600332,25600439-25600484
Length = 286
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +1
Query: 238 WREEHSRA*GKRSHQTGSPTPWAGDLHTCD 327
WR E S+ SH TG DLHT D
Sbjct: 173 WRLEESQMTSGTSHYTGETEAVKQDLHTAD 202
>12_02_1263 +
27423411-27423464,27423985-27424104,27424200-27424298,
27424405-27424542,27424647-27424706,27424865-27425044,
27425132-27425338,27425415-27425534,27425609-27425728,
27425819-27425941,27426074-27426178,27426379-27426523,
27426967-27427131,27427228-27427466,27427553-27427585,
27427894-27427975,27428100-27428260,27428422-27428607,
27428700-27428882,27428969-27429147,27429386-27429482
Length = 931
Score = 26.6 bits (56), Expect = 7.8
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 223 FNLSDTTAGVISLYCGTSLYSFSYVGL--SNNTWLFNLSRTFPLDHFFFL 80
F ++ A +I++Y + S +G + WL+NL FPLD FL
Sbjct: 774 FLVAQLIATLIAVYADWAFTSIKGIGWGWAGIVWLYNLIFYFPLDIIKFL 823
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 144 KPTYEKLYKEVPQYKLITPAVVSERL 221
KPT E+L K +PQ K++ AV E +
Sbjct: 39 KPTRERLEKLLPQIKVVLDAVDMEHI 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,546,613
Number of Sequences: 37544
Number of extensions: 219633
Number of successful extensions: 714
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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