Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10793
         (413 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)               84   4e-17
SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)           29   1.5  
SB_59757| Best HMM Match : Gly_radical (HMM E-Value=3.5)               29   2.0  
SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   2.0  
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    27   4.6  
SB_57167| Best HMM Match : Ribosomal_MRP8 (HMM E-Value=3)              27   6.1  
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_6285| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.1  
SB_25080| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
          Length = 115

 Score = 84.2 bits (199), Expect = 4e-17
 Identities = 40/51 (78%), Positives = 44/51 (86%)
 Frame = +3

Query: 120 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALSSLGKK 272
           LNN VLFDK TY+KLYKEVP Y+LITP+VVSERLK+RGSLARRAL  L  K
Sbjct: 41  LNNLVLFDKATYDKLYKEVPSYRLITPSVVSERLKIRGSLARRALLELQSK 91



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 24/42 (57%), Positives = 31/42 (73%)
 Frame = +2

Query: 215 KIKGPRFPGEKSTLELREKGLIKQVVQHHGQVIYTRATKGDD 340
           KI+G      ++ LEL+ KGLIK+V +HH Q+IYTRATKG D
Sbjct: 75  KIRGSL--ARRALLELQSKGLIKEVSKHHSQLIYTRATKGAD 114


>SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)
          Length = 111

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 218 IKGPRFPGEKSTLELREKGLIKQVVQHHG 304
           +KG    G   T EL + G +KQ++Q HG
Sbjct: 77  VKGQSIGGGMETAELYQSGKLKQLLQDHG 105


>SB_59757| Best HMM Match : Gly_radical (HMM E-Value=3.5)
          Length = 389

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
 Frame = -2

Query: 361 YHSLCDWII---ALGRTCVDH------LPMVLDYLFDETFFPKL 257
           YH+ CDW+      G TC+ H         +L+YLF   F P++
Sbjct: 65  YHAFCDWLFDGSNAGYTCLAHNFKGYDYYFILEYLFTNGFKPEV 108


>SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 928

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 126 CSTCHELFLWTTSSSWLCRHRILPSSSVFFEA-VCPKPSRPS 4
           C  C E F++TTS   L RH+++ S +  F+   C K  R S
Sbjct: 846 CDICKENFMYTTS---LARHKLIHSGAKPFKCDTCEKAFRSS 884


>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 175 TSLYSFSYVGLSNNTWLFNLSRTFPLDH 92
           +SL+     G+SN+ WL N S T P++H
Sbjct: 250 SSLHIEKENGISNDDWLSNPSFTSPIEH 277


>SB_57167| Best HMM Match : Ribosomal_MRP8 (HMM E-Value=3)
          Length = 698

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = -2

Query: 343 WIIALGRTCVDHLPMVLDYLFDETFFPKLESALLAREPRTFNL--SDTTAGVISL-YCGT 173
           W+     TC +   +   +LF+ T +   E  L+ R    FN   + T  G+++  +   
Sbjct: 463 WLFNTLYTCTERSLVTRRWLFN-TLYTYTERGLVTRR-WLFNTLYTCTERGLVTRRWLFN 520

Query: 172 SLYSFSYVGLSNNTWLFN 119
           +LY+ + +GL    WLFN
Sbjct: 521 TLYTCTEMGLVTRRWLFN 538



 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -2

Query: 259 LESALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTF 104
           LE+AL  RE  +    +  + V   +   +LY+++  GL    WLFN   TF
Sbjct: 386 LEAAL--REESSDEEDEERSLVTGRWLFNTLYTYTERGLVTRRWLFNTLYTF 435


>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 28  NSLKKHRRRRKDPVAAKPRRRSGPK 102
           N   KH  ++K PV   P+R  GPK
Sbjct: 304 NDKHKHNSKQKTPVVYFPKRPYGPK 328


>SB_6285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 242 EKSTLELREKGLIKQVVQHHGQ 307
           EKS + +R+KG+ KQ+ QH G+
Sbjct: 276 EKSAVFIRKKGVEKQLKQHAGK 297


>SB_25080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1007

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 189 ACTVGLPCTVSHTWVYQTTPGCSTCHELFL 100
           ACT  +  T++ ++ Y+ T G S+C+ +F+
Sbjct: 244 ACTEIVLVTLAFSYTYRLTLGLSSCYRVFV 273


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,060,898
Number of Sequences: 59808
Number of extensions: 254233
Number of successful extensions: 735
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)