Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10793
(413 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal prote... 73 6e-14
AF016449-12|AAG24004.2| 365|Caenorhabditis elegans Serpentine r... 32 0.14
Z66516-9|CAN99713.1| 455|Caenorhabditis elegans Hypothetical pr... 31 0.44
Z66516-8|CAB60308.2| 459|Caenorhabditis elegans Hypothetical pr... 31 0.44
Z50015-2|CAN99700.1| 455|Caenorhabditis elegans Hypothetical pr... 31 0.44
Z50015-1|CAB60292.2| 459|Caenorhabditis elegans Hypothetical pr... 31 0.44
L39212-1|AAC37255.1| 459|Caenorhabditis elegans transcription f... 31 0.44
AL021172-3|CAN99704.1| 455|Caenorhabditis elegans Hypothetical ... 31 0.44
AL021172-2|CAB60307.2| 459|Caenorhabditis elegans Hypothetical ... 31 0.44
Z81486-10|CAB03993.3| 681|Caenorhabditis elegans Hypothetical p... 29 1.0
Z81509-4|CAB04152.2| 236|Caenorhabditis elegans Hypothetical pr... 29 1.3
U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p... 27 4.1
U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical p... 27 5.4
AF016450-6|AAB65982.1| 311|Caenorhabditis elegans Serpentine re... 27 5.4
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 27 5.4
Z93378-4|CAE17803.1| 514|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 27 7.1
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 27 7.1
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 27 7.1
AC024776-7|AAK68469.1| 411|Caenorhabditis elegans Nuclear pore ... 27 7.1
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ... 27 7.1
U41510-1|ABP49525.1| 327|Caenorhabditis elegans Hypothetical pr... 26 9.4
U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical pr... 26 9.4
AF016442-3|AAB65917.2| 597|Caenorhabditis elegans Hypothetical ... 26 9.4
>U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 25 protein.
Length = 117
Score = 73.3 bits (172), Expect = 6e-14
Identities = 36/51 (70%), Positives = 40/51 (78%)
Frame = +3
Query: 120 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALSSLGKK 272
LNN VLFD+ TY+KLYKEV YKLITP+VVSERLKVR SLA+ L L K
Sbjct: 40 LNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAK 90
Score = 46.4 bits (105), Expect = 8e-06
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +2
Query: 257 ELREKGLIKQVVQHHGQVIYTRATKGDDPV 346
EL+ KGL+K VV HHGQV+YTRATK D +
Sbjct: 86 ELQAKGLVKCVVHHHGQVVYTRATKEADVI 115
>AF016449-12|AAG24004.2| 365|Caenorhabditis elegans Serpentine
receptor, class t protein71 protein.
Length = 365
Score = 32.3 bits (70), Expect = 0.14
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = -2
Query: 355 SLCDWIIALGRTCVDHLP-MVLDYLFDETFFPKLESALLAREPRTFNLSDTTAGVISLYC 179
S+C ++A+ R CV+ P L+ LF F P+L +P T N +LYC
Sbjct: 118 SVCSILLAIER-CVEINPHFPLEMLFLLNFQPELYEC----QPDTINNIVLVLCTSTLYC 172
Query: 178 GTSLYSFSYVGLSNNTWLFNLSR 110
S + G S ++WL+ R
Sbjct: 173 YISYHLLFNFGYSTSSWLYKSKR 195
>Z66516-9|CAN99713.1| 455|Caenorhabditis elegans Hypothetical
protein W03C9.4b protein.
Length = 455
Score = 30.7 bits (66), Expect = 0.44
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 123 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALSSLGKKVSSNR*SNT 299
NN+ L + PT K + P + +ITP +R S A +++ G V S+ S+T
Sbjct: 368 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 426
>Z66516-8|CAB60308.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 30.7 bits (66), Expect = 0.44
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 123 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALSSLGKKVSSNR*SNT 299
NN+ L + PT K + P + +ITP +R S A +++ G V S+ S+T
Sbjct: 372 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 430
>Z50015-2|CAN99700.1| 455|Caenorhabditis elegans Hypothetical
protein W03C9.4b protein.
Length = 455
Score = 30.7 bits (66), Expect = 0.44
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 123 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALSSLGKKVSSNR*SNT 299
NN+ L + PT K + P + +ITP +R S A +++ G V S+ S+T
Sbjct: 368 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 426
>Z50015-1|CAB60292.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 30.7 bits (66), Expect = 0.44
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 123 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALSSLGKKVSSNR*SNT 299
NN+ L + PT K + P + +ITP +R S A +++ G V S+ S+T
Sbjct: 372 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 430
>L39212-1|AAC37255.1| 459|Caenorhabditis elegans transcription
factor protein.
Length = 459
Score = 30.7 bits (66), Expect = 0.44
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 123 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALSSLGKKVSSNR*SNT 299
NN+ L + PT K + P + +ITP +R S A +++ G V S+ S+T
Sbjct: 372 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 430
>AL021172-3|CAN99704.1| 455|Caenorhabditis elegans Hypothetical
protein W03C9.4b protein.
Length = 455
Score = 30.7 bits (66), Expect = 0.44
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 123 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALSSLGKKVSSNR*SNT 299
NN+ L + PT K + P + +ITP +R S A +++ G V S+ S+T
Sbjct: 368 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 426
>AL021172-2|CAB60307.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 30.7 bits (66), Expect = 0.44
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 123 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALSSLGKKVSSNR*SNT 299
NN+ L + PT K + P + +ITP +R S A +++ G V S+ S+T
Sbjct: 372 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 430
>Z81486-10|CAB03993.3| 681|Caenorhabditis elegans Hypothetical
protein C53A5.13 protein.
Length = 681
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 5 EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 106
E REG G + + RIRW+ +EE+V R+
Sbjct: 25 EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58
>Z81509-4|CAB04152.2| 236|Caenorhabditis elegans Hypothetical
protein F21A3.6 protein.
Length = 236
Score = 29.1 bits (62), Expect = 1.3
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +3
Query: 153 YEKLYKEVPQYKLITP---AVVSERLKVRGSLARRA---LSSLGKKVSSNR*SNTMGR 308
+ +L+ E P+YKLI P A+ L L R A L+ LGK + S R +G+
Sbjct: 112 FVRLFSEYPRYKLIWPQFRAIPDSSLMNAVELRRHASVYLNGLGKIIDSMRDEEALGK 169
>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
protein C06A5.1 protein.
Length = 1932
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 233 FPGEKSTLELREKGLIKQVVQHHG 304
F GEK +ELR G I + V++HG
Sbjct: 126 FVGEKLKVELRIMGTIAETVKNHG 149
>U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical
protein C05D11.1 protein.
Length = 995
Score = 27.1 bits (57), Expect = 5.4
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 126 NQVLFDKPTYEKLYKEVPQYKLITPAVVSERL-KVRGSL 239
N +LFD+ EKL++++ + + P V E+L +VR +L
Sbjct: 694 NCILFDELVLEKLHEKISKDVMKNPEAVLEKLEQVRSAL 732
>AF016450-6|AAB65982.1| 311|Caenorhabditis elegans Serpentine
receptor, class t protein67 protein.
Length = 311
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -3
Query: 336 SPLVARV*ITCPWCWTTCLMRPFSLSSRVLFSPGNLG 226
+PLV ++ + C CW + ++ ++FSP + G
Sbjct: 130 TPLVVKMIVVCIVCWVLFVFIAGCITQNLMFSPPSWG 166
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Frame = -3
Query: 177 GLPCTVSHTWV-YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 58
GL + W YQ CS TC F W W CR R++
Sbjct: 353 GLSNQYTDEWYEYQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397
>Z93378-4|CAE17803.1| 514|Caenorhabditis elegans Hypothetical
protein F19H8.5 protein.
Length = 514
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 336 SPLVARV*ITCPWCWTTCLMRPFSLSSRVLFSPGNLGPLI 217
SPL+ + PW ++ + PF LS L SP PL+
Sbjct: 385 SPLILNPSVLSPWIFSPAVPLPFILSP-YLLSPYIFSPLV 423
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 1011
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -3
Query: 126 CSTCHELFLWTTSSSWLCRHRILPSSSVFFEAVCPKPSRP 7
C + F+ + C +LP+ S+ E PKP RP
Sbjct: 44 CRMQDDCFIGEICDNGFCCPNVLPTFSLQREPTSPKPKRP 83
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 46 RRRRKDPVAAKPRRRSGP 99
RRR+ P+ A PRRR P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 46 RRRRKDPVAAKPRRRSGP 99
RRR+ P+ A PRRR P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495
>AC024776-7|AAK68469.1| 411|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform a protein.
Length = 411
Score = 26.6 bits (56), Expect = 7.1
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -2
Query: 280 DETFFPKLES--ALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 131
DET F + S AL A + NL TTA + LY S S + + NN+
Sbjct: 307 DETSFHSITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 358
>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform b protein.
Length = 1090
Score = 26.6 bits (56), Expect = 7.1
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -2
Query: 280 DETFFPKLES--ALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 131
DET F + S AL A + NL TTA + LY S S + + NN+
Sbjct: 222 DETSFHSITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 273
>U41510-1|ABP49525.1| 327|Caenorhabditis elegans Hypothetical
protein ZC449.6 protein.
Length = 327
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +2
Query: 164 VQGSPTVQANHTCCRI*KIKGPR-FPGEKSTLELREKGLIKQVVQHHGQVIYTRATKGDD 340
V+ T+Q TC R I GP+ + +++ K L + HG+ + + G++
Sbjct: 135 VRSQSTIQFKTTCLRFRAIYGPQDVTVAEKVVQMVRKNLFMVKISRHGRESVSNMSSGEN 194
>U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical
protein C06E7.4 protein.
Length = 500
Score = 26.2 bits (55), Expect = 9.4
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = -2
Query: 247 LLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPP 68
++ R+P ++ ++ + C S FS+V + R L F+F PP
Sbjct: 340 IIRRQP-SYGSRSSSIATSQMRCDQSEIDFSWVNEEEDKLKRESKRIDSLPEFYFGMDPP 398
Query: 67 PDPS 56
P PS
Sbjct: 399 PVPS 402
>AF016442-3|AAB65917.2| 597|Caenorhabditis elegans Hypothetical
protein K12B6.2 protein.
Length = 597
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 173 FLVQFLIRGFIKQHLVVQLVTNFSFGPLL 87
FL +L+R + + ++L+ NF FG L+
Sbjct: 20 FLTDYLVRSEVSDYYRLRLLVNFLFGLLI 48
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,787,450
Number of Sequences: 27780
Number of extensions: 185578
Number of successful extensions: 623
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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