Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10793
         (413 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34555.1 68417.m04910 40S ribosomal protein S25, putative           68   2e-12
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo...    67   5e-12
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)            66   7e-12
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)            66   7e-12
At1g14500.1 68414.m01719 ankyrin repeat family protein contains ...    29   1.6  
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri...    27   3.8  
At5g67560.1 68418.m08519 ADP-ribosylation factor, putative ident...    27   5.0  
At5g37680.1 68418.m04538 ADP-ribosylation factor, putative ADP-r...    27   6.6  
At5g06510.3 68418.m00734 CCAAT-binding transcription factor (CBF...    27   6.6  
At5g06510.2 68418.m00733 CCAAT-binding transcription factor (CBF...    27   6.6  
At5g06510.1 68418.m00732 CCAAT-binding transcription factor (CBF...    27   6.6  
At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family pr...    27   6.6  
At1g24706.1 68414.m03104 expressed protein                             27   6.6  
At1g48180.1 68414.m05378 expressed protein ; expression supporte...    26   8.7  

>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
          Length = 108

 Score = 68.1 bits (159), Expect = 2e-12
 Identities = 29/51 (56%), Positives = 41/51 (80%)
 Frame = +3

Query: 120 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALSSLGKK 272
           +NN VLFD+ TY+KL  E P++KLITP+++S+RL++ GSLARRA+  L  K
Sbjct: 37  VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAK 87



 Score = 31.9 bits (69), Expect = 0.18
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +2

Query: 257 ELREKGLIKQVVQHHGQVIYTRATKG 334
           EL  KG I+ V  H  Q IYTRAT G
Sbjct: 83  ELMAKGTIRMVSAHSSQQIYTRATHG 108


>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
           ribosomal protein S25, Lycopersicon esculentum,
           PIR2:S40089
          Length = 108

 Score = 66.9 bits (156), Expect = 5e-12
 Identities = 28/51 (54%), Positives = 41/51 (80%)
 Frame = +3

Query: 120 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALSSLGKK 272
           +NN VLFD+ TY+KL  E P++KLITP+++S+R+++ GSLARRA+  L  K
Sbjct: 37  VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAK 87



 Score = 31.5 bits (68), Expect = 0.23
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 257 ELREKGLIKQVVQHHGQVIYTRAT 328
           EL  KG+I+ V  H  Q IYTRAT
Sbjct: 83  ELMAKGVIRMVAAHSSQQIYTRAT 106


>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
          Length = 108

 Score = 66.5 bits (155), Expect = 7e-12
 Identities = 28/51 (54%), Positives = 41/51 (80%)
 Frame = +3

Query: 120 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALSSLGKK 272
           +NN VLFD+ TY+KL  E P++KLITP+++S+R+++ GSLARRA+  L  K
Sbjct: 37  VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAK 87



 Score = 31.9 bits (69), Expect = 0.18
 Identities = 15/24 (62%), Positives = 16/24 (66%)
 Frame = +2

Query: 257 ELREKGLIKQVVQHHGQVIYTRAT 328
           EL  KGLI+ V  H  Q IYTRAT
Sbjct: 83  ELMAKGLIRMVSAHSSQQIYTRAT 106


>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 
          Length = 125

 Score = 66.5 bits (155), Expect = 7e-12
 Identities = 27/48 (56%), Positives = 40/48 (83%)
 Frame = +3

Query: 120 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALSSL 263
           +NN VLFD+ TY+KL  E P++KLITP+++S+RL++ GSLAR+A+  L
Sbjct: 53  VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDL 100


>At1g14500.1 68414.m01719 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 436

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 184 YCGTSLYSFSYVGLSN--NTWLFNLSRTFPLDHFFFLALPPPDPSFFFC 44
           +C   LY+F  + + +   TW F +  +  + +   +A+  P+P  F C
Sbjct: 342 FCCALLYTFCLLPIGSLFTTWFFWIGASLGVSYALAMAIISPNPLLFLC 390


>At2g17250.1 68415.m01992 expressed protein weak similarity to
           Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
           [Saccharomyces cerevisiae]
          Length = 577

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = +3

Query: 123 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVR 230
           +++ + +KPT +K   E     L++PA +S+R+K++
Sbjct: 245 SDESISEKPTDKKKKTEKGDSTLLSPATISKRMKLK 280


>At5g67560.1 68418.m08519 ADP-ribosylation factor, putative
           identical to GP:15450888 ADP-ribosylation factor-like
           protein {Arabidopsis thaliana]
          Length = 184

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 182 LWDFLVQFLIRGFIKQHLVVQLVTNFSFGPLLLLGFAATG 63
           LWD L+ +L   F KQ + + L+   + G   L+   ATG
Sbjct: 3   LWDALLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATG 42


>At5g37680.1 68418.m04538 ADP-ribosylation factor, putative
           ADP-ribosylation factor, Leishmania major, EMBL:LMFP1421
           and ADP-ribosylation factor-like protein 1 (ARL1)
           (SP:P40616) Homo sapiens; contains PF00025:
           ADP-ribosylation factor family
          Length = 184

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 182 LWDFLVQFLIRGFIKQHLVVQLVTNFSFGPLLLLGFAATG 63
           LWD L+ +L   F KQ + + LV   + G   L+   ATG
Sbjct: 3   LWDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNAIATG 42


>At5g06510.3 68418.m00734 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 220

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 277 ETFFPKLESALLAREPRTFNLSDTTAGVISLYCGTSLYS 161
           E F P+ E+   +RE    NLSD+    +  +  +S YS
Sbjct: 158 EVFHPENETINSSREANESNLSDSAVTSMDYFLSSSAYS 196


>At5g06510.2 68418.m00733 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 269

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 277 ETFFPKLESALLAREPRTFNLSDTTAGVISLYCGTSLYS 161
           E F P+ E+   +RE    NLSD+    +  +  +S YS
Sbjct: 207 EVFHPENETINSSREANESNLSDSAVTSMDYFLSSSAYS 245


>At5g06510.1 68418.m00732 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 269

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 277 ETFFPKLESALLAREPRTFNLSDTTAGVISLYCGTSLYS 161
           E F P+ E+   +RE    NLSD+    +  +  +S YS
Sbjct: 207 EVFHPENETINSSREANESNLSDSAVTSMDYFLSSSAYS 245


>At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain, weak hit to PF01661: Appr-1-p
           processing enzyme family
          Length = 912

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 350 MRLDHRPWSHVCR 312
           MR  HRPWS +C+
Sbjct: 248 MRSSHRPWSRICQ 260


>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 121  NLSRTFPLDHFFFLALPPPDP 59
            +L ++ P DHF    LPPP P
Sbjct: 1562 SLEKSHPDDHFHSQGLPPPPP 1582


>At1g48180.1 68414.m05378 expressed protein ; expression supported
           by MPSS
          Length = 239

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 217 LSDTTAGVISLYCGTSLYSFSYVGL 143
           L    + +  +YCGTS    SYVGL
Sbjct: 149 LQQDASAITGIYCGTSGEPASYVGL 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,336,573
Number of Sequences: 28952
Number of extensions: 171417
Number of successful extensions: 571
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)