Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10790X
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    45   3e-06
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    45   4e-06
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...    41   5e-05
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    25   3.7  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    24   6.4  

>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 45.2 bits (102), Expect = 3e-06
 Identities = 17/31 (54%), Positives = 23/31 (74%)
 Frame = +1

Query: 259 KPGRYFCHVGTLSRDIGWIYRDVVRTLEDKR 351
           KPGR +C VG LS ++GW Y D+V  LE++R
Sbjct: 131 KPGRKYCTVGRLSSEVGWKYNDIVAKLEERR 161



 Score = 36.3 bits (80), Expect = 0.001
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +2

Query: 137 PHNTERGKXALRRLRTYNGCPPPFD 211
           PH T RG+ AL  L+   G PPPFD
Sbjct: 90  PHKTARGQAALEHLQAVEGIPPPFD 114


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 44.8 bits (101), Expect = 4e-06
 Identities = 17/31 (54%), Positives = 23/31 (74%)
 Frame = +1

Query: 259 KPGRYFCHVGTLSRDIGWIYRDVVRTLEDKR 351
           KPGR +C VG LS ++GW Y D+V  LE++R
Sbjct: 131 KPGRKYCTVGRLSSEVGWKYSDIVSKLEERR 161



 Score = 36.3 bits (80), Expect = 0.001
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +2

Query: 137 PHNTERGKXALRRLRTYNGCPPPFD 211
           PH T RG+ AL  L+   G PPPFD
Sbjct: 90  PHKTARGQAALEHLQAVEGIPPPFD 114


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 41.1 bits (92), Expect = 5e-05
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = +1

Query: 259 KPGRYFCHVGTLSRDIGWIYRDVVRTLEDKR 351
           KP R +C +G LS ++GW Y+++V  LE++R
Sbjct: 131 KPSRKYCTIGRLSSEVGWKYKNIVSKLEERR 161



 Score = 36.7 bits (81), Expect = 0.001
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +2

Query: 137 PHNTERGKXALRRLRTYNGCPPPFD 211
           PH T RG  AL+ L+   G PPPFD
Sbjct: 90  PHKTTRGNIALKNLQALEGIPPPFD 114


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +1

Query: 262 PGRYFCHVGTLSRDIGWIYRDVVRTLED 345
           PG+++CHV  +   +G++Y + ++  +D
Sbjct: 223 PGKWWCHVRLVYLPMGYMYGERLKCPKD 250


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 350 LLSSSVRTTSRYIHPISRD 294
           LLSSS+  T+R  HP+ +D
Sbjct: 323 LLSSSMDKTARLWHPVRKD 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 952,167
Number of Sequences: 5004
Number of extensions: 14513
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)