Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10790X
(366 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0071 - 522920-523063,524125-524212,524289-524677 44 4e-05
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 43 6e-05
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 34 0.030
11_04_0056 + 12942802-12942920,12943022-12943115 33 0.091
08_02_0949 - 22920363-22920685,22922621-22922824,22923170-229232... 30 0.64
07_01_0119 - 908600-909592,909685-909885 27 6.0
04_03_0232 - 13049649-13052807 26 7.9
03_05_0875 - 28434894-28435082,28435173-28435247,28435399-284354... 26 7.9
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 44.0 bits (99), Expect = 4e-05
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +1
Query: 259 KPGRYFCHVGTLSRDIGWIYRDVVRTLEDKRSGNA 363
+PG +C +G LS+++GW Y D +R LE+KR A
Sbjct: 135 QPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKA 169
Score = 37.1 bits (82), Expect = 0.004
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 137 PHNTERGKXALRRLRTYNGCPPPFD 211
PH T RG+ AL L+ ++G PPP+D
Sbjct: 94 PHKTPRGEAALANLKAFDGVPPPYD 118
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 43.2 bits (97), Expect = 6e-05
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +1
Query: 259 KPGRYFCHVGTLSRDIGWIYRDVVRTLEDKRSGNA 363
+PG +C +G LS+++GW Y D +R LE+KR A
Sbjct: 135 QPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKA 169
Score = 41.1 bits (92), Expect = 3e-04
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 137 PHNTERGKXALRRLRTYNGCPPPFD 211
PH T+RG+ AL RL+ Y G PPP+D
Sbjct: 94 PHKTKRGEAALARLKAYEGVPPPYD 118
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 34.3 bits (75), Expect = 0.030
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 137 PHNTERGKXALRRLRTYNGCPPPFD 211
PH T+RG+ AL RL+ Y PP+D
Sbjct: 28 PHKTKRGEAALARLKAYEVVTPPYD 52
Score = 34.3 bits (75), Expect = 0.030
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 259 KPGRYFCHVGTLSRDIGWIYRDVVR 333
+PG +C +G LS+++GW Y D +R
Sbjct: 69 QPGHKYCLLGQLSKEVGWNYYDTIR 93
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 32.7 bits (71), Expect = 0.091
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 152 RGKXALRRLRTYNGCPPPFD 211
RG+ AL RL+ Y G PPP+D
Sbjct: 9 RGEAALARLKAYEGVPPPYD 28
Score = 29.5 bits (63), Expect = 0.85
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 259 KPGRYFCHVGTLSRDIGWIY 318
+PG +C +G LS+++GW Y
Sbjct: 45 QPGHKYCLLGQLSKEVGWNY 64
>08_02_0949 -
22920363-22920685,22922621-22922824,22923170-22923263,
22923376-22923470,22923612-22923783
Length = 295
Score = 29.9 bits (64), Expect = 0.64
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -3
Query: 340 QAYEQHHGISIQYHGTVCPHDRNNGQVSEEDT*SSRHYNTPTG---IKGRRAPIICT*PP 170
QA +H S HG V PH + G +++D SS+ TP G +R+ PP
Sbjct: 148 QAELEHPPSSASSHGNVGPHASDTGASADKDC-SSKRPATPEGNETASSKRSRTTAAPPP 206
Query: 169 KSXLATLCV 143
S T V
Sbjct: 207 LSGAGTSVV 215
>07_01_0119 - 908600-909592,909685-909885
Length = 397
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 266 PGFRRRHVEQQALQHADGYQREEGTHYMYVAS 171
P RRR + ++ ++ + + RE G Y YVA+
Sbjct: 112 PRHRRRGIGRRLVERMEEWFREMGAEYAYVAT 143
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 358 CPTSCLQAYEQHHGISIQ 305
CP++CL+ Y H IS+Q
Sbjct: 764 CPSNCLKPYSAHCYISVQ 781
>03_05_0875 -
28434894-28435082,28435173-28435247,28435399-28435490,
28435721-28435835,28436019-28436188,28436237-28436310,
28436397-28436553,28436658-28436730,28436898-28436960,
28437067-28437341,28437710-28437816,28437884-28438788,
28439742-28440032
Length = 861
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -3
Query: 322 HGISIQYHGTVCPHDRNNGQVSEEDT*SSRHYNTPTGIK 206
H ++YH P RN+ + +D S H + TG +
Sbjct: 138 HEAIVEYHSRRSPGSRNHNEAHSKDCLRSCHASRETGFQ 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,820,623
Number of Sequences: 37544
Number of extensions: 110912
Number of successful extensions: 235
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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