Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10790X
         (366 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.006
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.5  
SB_33455| Best HMM Match : Keratin_B2 (HMM E-Value=4.2)                26   8.1  

>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 36.7 bits (81), Expect = 0.006
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 137 PHNTERGKXALRRLRTYNGCPPPFD 211
           PH T++G  A+ R++ ++G PPP+D
Sbjct: 3   PHKTKKGTEAMNRMKVFDGVPPPYD 27


>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2409

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 361  RCPTSCLQAYEQHHGISIQYHGTVC 287
            RC  SC     QH GIS+Q    VC
Sbjct: 2200 RCIQSCRAPTTQHKGISLQQEVAVC 2224


>SB_33455| Best HMM Match : Keratin_B2 (HMM E-Value=4.2)
          Length = 388

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 344 SSSVRTTSRYIHPISRDSVPT*QK*RPGFRRRHVEQQALQHAD 216
           S ++R +SR I P +R   P+ +  RP  R       A++H+D
Sbjct: 124 SRAIRPSSRTIRPSNRAIRPSSRAIRPSSRTIRPSSCAIRHSD 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,749,061
Number of Sequences: 59808
Number of extensions: 125029
Number of successful extensions: 996
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)