Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10790X
         (366 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...    40   4e-04
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...    40   4e-04
Z92847-4|CAL69740.1|  130|Caenorhabditis elegans Hypothetical pr...    27   3.1  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +1

Query: 259 KPGRYFCHVGTLSRDIGWIYRDVVRTLEDKR 351
           +P R FC VG LS ++GW ++DVV  LE KR
Sbjct: 130 QPRRKFCVVGRLSHEVGWQFQDVVAKLEAKR 160



 Score = 31.9 bits (69), Expect = 0.14
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 137 PHNTERGKXALRRLRTYNGCPPPF 208
           PH T RG  AL+ LR Y G P  +
Sbjct: 90  PHKTNRGNEALKNLRAYEGVPAKY 113


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +1

Query: 259 KPGRYFCHVGTLSRDIGWIYRDVVRTLEDKR 351
           +P R FC VG LS ++GW ++DVV  LE KR
Sbjct: 130 QPRRKFCVVGRLSHEVGWQFQDVVAKLEAKR 160



 Score = 31.9 bits (69), Expect = 0.14
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 137 PHNTERGKXALRRLRTYNGCPPPF 208
           PH T RG  AL+ LR Y G P  +
Sbjct: 90  PHKTNRGNEALKNLRAYEGVPAKY 113


>Z92847-4|CAL69740.1|  130|Caenorhabditis elegans Hypothetical
           protein H01G02.4 protein.
          Length = 130

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 259 KPGRYFCHVGTLSRDIGWIYRDVVRTLEDKRS 354
           KPGR++ +V    + + W+     R L +K++
Sbjct: 90  KPGRFYFNVELSRKSVNWLQTPTCRNLTEKKT 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,506,568
Number of Sequences: 27780
Number of extensions: 90171
Number of successful extensions: 190
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)