Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10790X
         (366 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   0.49 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   1.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   2.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 0.49
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 286 GTLSRDIGWIYRDVVRTLED 345
           GT+ + + ++YR V + LED
Sbjct: 237 GTVKKKVNYVYRSVDQVLED 256


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 220 PTGIKGRRAPIIC 182
           P GI GRRA + C
Sbjct: 226 PKGINGRRASLFC 238


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 220 PTGIKGRRAPIIC 182
           P GI GRRA + C
Sbjct: 221 PKGINGRRASLFC 233


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 262 PGRYFCHVGTLSR 300
           PGR+FC V  + R
Sbjct: 132 PGRFFCEVRPIKR 144


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,753
Number of Sequences: 438
Number of extensions: 1183
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)