Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10790X
         (366 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri...    39   0.001
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si...    39   0.001
At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)          37   0.004
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si...    36   0.011

>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
           ribosomal protein L13a -Lupinus luteus,PID:e1237871
          Length = 206

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 137 PHNTERGKXALRRLRTYNGCPPPFD 211
           PH T+RG  AL RL+ + G PPP+D
Sbjct: 94  PHKTKRGAAALARLKVFEGIPPPYD 118


>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
           similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
           [Rattus norvegicus]
          Length = 206

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 137 PHNTERGKXALRRLRTYNGCPPPFD 211
           PH T+RG  AL RL+ + G PPP+D
Sbjct: 94  PHKTKRGAAALARLKVFEGVPPPYD 118


>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
          Length = 206

 Score = 37.1 bits (82), Expect = 0.004
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 137 PHNTERGKXALRRLRTYNGCPPPFD 211
           PH T+RG  AL RL+ Y G P P+D
Sbjct: 94  PHKTKRGAAALARLKVYEGVPTPYD 118


>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
           similar to ribosomal protein L13A GB:O49885 [Lupinus
           luteus]
          Length = 206

 Score = 35.5 bits (78), Expect = 0.011
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 137 PHNTERGKXALRRLRTYNGCPPPFD 211
           PH T+RG  AL RL+ + G P P+D
Sbjct: 94  PHKTKRGANALARLKVFEGVPTPYD 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,188,059
Number of Sequences: 28952
Number of extensions: 81548
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)