Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10785
         (754 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   8.0  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 568 EVSGLGRIQRSKCKSSDPLLTPLFKSR*HIVVHVSLDVSL 449
           +V+  G+I+  KCK  D +     +   H  VH+  D  L
Sbjct: 192 KVNSHGKIKTFKCKQCDFVAITKLEQWNHSKVHIREDKRL 231


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -3

Query: 248  FFDILLIPLGIKKIFHIFFSIRK*FVLNKADRCCS 144
            FF ++L+   +  +FH F +I       + + CC+
Sbjct: 1333 FFALILVIQFVAMLFHRFGTIAHILASTELNLCCT 1367


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -3

Query: 248  FFDILLIPLGIKKIFHIFFSIRK*FVLNKADRCCS 144
            FF ++L+   +  +FH F +I       + + CC+
Sbjct: 1333 FFALILVIQFVAMLFHRFGTIAHILASTELNLCCT 1367


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -3

Query: 248  FFDILLIPLGIKKIFHIFFSIRK*FVLNKADRCCS 144
            FF ++L+   +  +FH F +I       + + CC+
Sbjct: 1333 FFALILVIQFVAMLFHRFGTIAHILASTELNLCCT 1367


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -3

Query: 248  FFDILLIPLGIKKIFHIFFSIRK*FVLNKADRCCS 144
            FF ++L+   +  +FH F +I       + + CC+
Sbjct: 1333 FFALILVIQFVAMLFHRFGTIAHILASTELNLCCT 1367


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3

Query: 588 WGPTSFHRW 614
           WG T +H W
Sbjct: 494 WGTTEYHNW 502


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,470
Number of Sequences: 336
Number of extensions: 3702
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)