Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10785
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 65 1e-11
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 29 0.71
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 29 0.71
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 27 2.2
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 27 2.9
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c... 27 3.8
SPBC36.08c |cog2||Golgi transport complex subunit Cog2 |Schizosa... 27 3.8
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 26 5.0
>SPAC644.08 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 64.9 bits (151), Expect = 1e-11
Identities = 29/52 (55%), Positives = 36/52 (69%)
Frame = +1
Query: 517 GQKIYIYSSGSVQAQKLLFGQSSAGDLLPFIDGHFDTAVGAKQEATSYTAIV 672
G ++YIYSSGSV AQKL F S AG+LL + G++DT +G K E SY IV
Sbjct: 108 GMRVYIYSSGSVPAQKLYFEHSDAGNLLKYFSGYYDTTIGLKTECGSYVKIV 159
Score = 50.8 bits (116), Expect = 2e-07
Identities = 24/45 (53%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Frame = +3
Query: 117 KVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWD-EEDVKE 248
K LLLDIEGT SISFVKDKLFPYA + +++ ++ +E+++E
Sbjct: 3 KNLLLDIEGTVGSISFVKDKLFPYAASRYESYVNENYESDENLRE 47
Score = 45.2 bits (102), Expect = 1e-05
Identities = 20/63 (31%), Positives = 38/63 (60%)
Frame = +2
Query: 350 EGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHVYDDVLPALEQWRQ*RVRRF 529
E L+ N++ + K K +QG IWKKGY+ ++ H++ DV+PA+++ Q +R +
Sbjct: 54 EALI-NLRKLHAEGSKERSFKMVQGRIWKKGYESNELTSHLFPDVVPAIQRSLQLGMRVY 112
Query: 530 TFT 538
++
Sbjct: 113 IYS 115
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 29.1 bits (62), Expect = 0.71
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +2
Query: 254 DALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLI 430
+AL KL + +VT G A KED+ + ++ MS+ RKVA LK+L+G I
Sbjct: 328 EALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDL---MSAARKVADLKKLEGTI 383
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 29.1 bits (62), Expect = 0.71
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 269 LAIEDQEKSVEGLVTIPGE--DASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKG 442
L ++D EK ++ P E + KE +G V N +SSD+ ++ + L +
Sbjct: 581 LPVKDDEKDLDLRELNPLEPFENMKEQADDGTVTN-PLNVSSDKAMS----VYLLSSENA 635
Query: 443 YDKGDIKGHVYDDVLPALE 499
D GDIK D VLP LE
Sbjct: 636 KDTGDIKSESIDAVLPTLE 654
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 329 HPLREW*PVLQHSSPD 282
HP +EW LQH+SPD
Sbjct: 270 HPFKEWLLNLQHTSPD 285
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -1
Query: 172 SLTKLIDVVVPSISRSKTLLFLTISPITVFSFAISTDPHQLCRNYFYVFQNL 17
++ +I + P + SK +F+ ITVF S DP+ + N+ +V++ L
Sbjct: 182 TIRDVISLAFPVLD-SKNCVFIMDEIITVFINNSSNDPNLISENWDFVWKKL 232
>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +3
Query: 111 KSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEED 239
+ ++ L +E T TSI + +FPY + F W +D
Sbjct: 182 QDRISALILENTFTSIKDMIPTVFPYGGSIISRFCTEIWSSQD 224
>SPBC36.08c |cog2||Golgi transport complex subunit Cog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 191
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 666 SSVTGSFLFSTYSSVEMAIDERK*VPSR*LTKKKFLGLDG 547
S + +FL Y + E + P L K+FLGLDG
Sbjct: 10 SDLVDAFLSDAYLNTEELRKDGPFSPDEFLVSKRFLGLDG 49
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 580 SSAGDLLPFIDGHFDTAVGAKQEATSYTAIVEKI 681
SSA +L I+G F+ A+GA + TA+++ I
Sbjct: 491 SSAPTILTDINGDFEMALGASGGSRIVTAVLDSI 524
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,680
Number of Sequences: 5004
Number of extensions: 65300
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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