Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10785
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472... 79 3e-15
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 77 1e-14
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574... 29 5.2
08_02_0919 - 22627147-22627326,22627646-22627726,22627827-226281... 29 5.2
06_01_0608 - 4399252-4399894,4401640-4402427 29 5.2
07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,779... 28 9.2
>11_04_0330 -
16446685-16446776,16446968-16447119,16447172-16447281,
16447518-16447619,16447705-16447854,16448195-16448350,
16448552-16448713,16449549-16449638,16450152-16450271,
16451323-16451418,16451502-16451638,16453400-16453622
Length = 529
Score = 79.4 bits (187), Expect = 3e-15
Identities = 37/82 (45%), Positives = 53/82 (64%)
Frame = +2
Query: 260 LRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKK 439
LR ED + + G V IP +DA KE+ I LV NV+ + +DRK+ LKQLQG IW+
Sbjct: 325 LRIQVEEDLKNGIVGSVPIPPDDADKEEVINALVANVESMIKADRKITSLKQLQGHIWRT 384
Query: 440 GYDKGDIKGHVYDDVLPALEQW 505
G++ +++G V+DDV AL+ W
Sbjct: 385 GFESKELQGVVFDDVPEALKHW 406
Score = 53.6 bits (123), Expect = 2e-07
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = +1
Query: 517 GQKIYIYSSGSVQAQKLLFGQSSAGDLLPFIDGHFDTAVG 636
G K+YIYSSGS +AQ+LLFG ++ GDL ++ G FDT G
Sbjct: 410 GMKVYIYSSGSREAQRLLFGNTAYGDLRQYLCGFFDTTTG 449
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Frame = +3
Query: 108 KKSK-VLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAV 254
K SK ++LDIEGTTT ISFV D +FPYA +NV+ L + + ++ KE +
Sbjct: 273 KSSKHCVVLDIEGTTTPISFVTDVMFPYARDNVRKHLTSTYSSDETKEDI 322
>01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 77.4 bits (182), Expect = 1e-14
Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Frame = +2
Query: 260 LRKLAIEDQEKSVEGLVTIPGEDASKEDQ---IEGLVKNVKWQMSSDRKVAPLKQLQGLI 430
LR ED + V+G V +P DA E + +E L NV+ + +DRKV LKQLQG I
Sbjct: 954 LRAQVEEDLAQGVDGAVAVP-PDAEGEGEGAVVEALAANVESMIRADRKVTALKQLQGRI 1012
Query: 431 WKKGYDKGDIKGHVYDDVLPALEQWR 508
W++G+D G+++ VYDD AL +WR
Sbjct: 1013 WRRGFDSGELRSEVYDDAADALRRWR 1038
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +1
Query: 523 KIYIYSSGSVQAQKLLFGQSSA-GDLLPFIDGHFDTAVGAKQEATSYTAIVEKIG 684
K YIYSSGS +AQ+L+F ++A GDL + G FDT +GAK+E +SY I + +G
Sbjct: 1040 KAYIYSSGSREAQRLIFANTAAHGDLRDHLCGFFDTTIGAKREVSSYYEIWQTLG 1094
Score = 49.6 bits (113), Expect = 3e-06
Identities = 27/60 (45%), Positives = 37/60 (61%)
Frame = +3
Query: 72 MAKENTVIGDIVKKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEA 251
MA ++ + D+ +V+L DIEGTTT ISFV D LFPYA +NV+ L A + + A
Sbjct: 891 MAMASSELPDLSAIQRVVL-DIEGTTTPISFVADVLFPYARDNVRRHLAATYGSSEETRA 949
>08_02_1236 +
25454371-25456801,25456891-25457177,25457258-25457416,
25457561-25457740,25457823-25458017,25459059-25459157,
25459508-25460137,25460250-25460591
Length = 1440
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 347 IEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIK 463
+EG +K + Q+ D+KVA K + I GY++GD K
Sbjct: 462 LEGTLK-IDQQIEGDQKVANKKVTEEEILTNGYEQGDAK 499
>08_02_0919 -
22627147-22627326,22627646-22627726,22627827-22628103,
22629451-22629755,22629835-22629987,22630318-22631076
Length = 584
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +3
Query: 495 LNNGVSRGSEDLHLLLWIRPSPETSFWSVI---CWGPTSFHRW 614
L N G+ D+ LL R +P SF W PT+FH W
Sbjct: 46 LLNSPGIGASDVDALLLRRTAPVRSFRLATRDRSWSPTAFHDW 88
>06_01_0608 - 4399252-4399894,4401640-4402427
Length = 476
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 183 PYAEENVKDFLDAQWDEEDVK 245
PY E++++ LD + DEEDV+
Sbjct: 371 PYTEDDIRKILDIRCDEEDVE 391
>07_01_0010 +
72162-74303,74470-74545,75971-76043,76496-76540,
77916-78116,78463-78541,78637-78678,78788-78847,
79087-80484,80777-80902,81037-81300
Length = 1501
Score = 27.9 bits (59), Expect = 9.2
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +2
Query: 290 KSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGY-DK--GDI 460
K+ EG V I + A + L + WQ S + + +L+ L W Y DK +I
Sbjct: 736 KTTEGCVEINVDGAQLRIMLTNLKVSPVWQKVSPQDNIFICELRILTWGDVYVDKVITEI 795
Query: 461 KGHVYDDVLPALEQ 502
KG +YD + + Q
Sbjct: 796 KGDLYDSPIDSKNQ 809
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,930,773
Number of Sequences: 37544
Number of extensions: 440038
Number of successful extensions: 998
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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