Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10785
(754 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56823| Best HMM Match : Rhabdo_NV (HMM E-Value=7.4) 66 3e-11
SB_39750| Best HMM Match : Borrelia_orfA (HMM E-Value=1.1) 32 0.57
SB_10836| Best HMM Match : Fork_head (HMM E-Value=0) 31 1.0
SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_42805| Best HMM Match : Aminotran_5 (HMM E-Value=8.7e-25) 29 4.1
SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0) 29 5.4
SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43) 29 5.4
SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_59693| Best HMM Match : Phage_integr_N (HMM E-Value=2.3) 28 9.4
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0) 28 9.4
>SB_56823| Best HMM Match : Rhabdo_NV (HMM E-Value=7.4)
Length = 157
Score = 66.1 bits (154), Expect = 3e-11
Identities = 29/62 (46%), Positives = 39/62 (62%)
Frame = +2
Query: 323 EDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHVYDDVLPALEQ 502
E A +E L+ + M DRK LK LQG+IW++GY GD GH+Y DVLP+LE+
Sbjct: 14 EIAQPAASVEQLIATLFAFMDEDRKSTALKALQGIIWREGYVNGDFTGHLYPDVLPSLEK 73
Query: 503 WR 508
W+
Sbjct: 74 WK 75
Score = 36.7 bits (81), Expect = 0.020
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +1
Query: 514 EGQKIYIYSSGSVQAQKLLFGQS 582
+G +Y+YSSGSV AQKLLFG S
Sbjct: 77 QGIDLYVYSSGSVAAQKLLFGYS 99
>SB_39750| Best HMM Match : Borrelia_orfA (HMM E-Value=1.1)
Length = 810
Score = 31.9 bits (69), Expect = 0.57
Identities = 30/116 (25%), Positives = 45/116 (38%)
Frame = +2
Query: 272 AIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDK 451
AIE K E + SKED+ + V+ + Q+ + ++ L L + W G D
Sbjct: 23 AIELARKLEEEKKKAVSDKESKEDK-DSFVEKLAMQVVKNLQLMELNSLS-MYWNTGDDI 80
Query: 452 GDIKGHVYDDVLPALEQWRQ*RVRRFTFTPLDPSKPRNFFLVSHLLGTYFLSSMAI 619
G LP E+W T SKP F H +G Y++ S +
Sbjct: 81 GK---------LPTKEEWPTIAKEGIARTMKGFSKPEGFKYGKHCIGLYYMDSSIV 127
>SB_10836| Best HMM Match : Fork_head (HMM E-Value=0)
Length = 458
Score = 31.1 bits (67), Expect = 1.0
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Frame = +1
Query: 376 ADVVRP*SCPPEATPGAYLEKRL**GRHQGTRVRRCATGS*TMA---SVEGQKIYIYSS- 543
A++VR SCPP AT L KR + + R +GS TM +++ +KIY S+
Sbjct: 274 AEIVRCQSCPPSATEQDSLVKR---AKEYFYKHRGSFSGSPTMVKDFAIKRRKIYGLSAS 330
Query: 544 -GSVQAQKLLFGQSSAGDLLPFIDGHFD 624
G +++ KL +S + D +DG F+
Sbjct: 331 MGRIESPKLKNRKSISPD--SSLDGEFE 356
>SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +2
Query: 302 GLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYD 448
G + PGED +K+D I+ L + ++ + S R++ +L+GL++ K D
Sbjct: 201 GHLAPPGEDKTKQDLIQNLGR-LRQRRRSIREIQNRDELEGLMYVKQGD 248
>SB_42805| Best HMM Match : Aminotran_5 (HMM E-Value=8.7e-25)
Length = 357
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 135 IEGTTTSISFVKDKLFPYAE--ENVKDFLDAQWDEEDVKEAV 254
I G + V D L+ Y E ENV+D+L+A E+ KE +
Sbjct: 214 IAGLGQAAQLVVDHLYEYQEHMENVRDYLEASLTEKFGKECI 255
>SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)
Length = 1649
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = +3
Query: 393 VKLPP*SNSRGLSGKKVMIRETSRDTCTTMCYRL 494
VK PP S + SGKKV I E S T M RL
Sbjct: 1025 VKKPPFSGFQTASGKKVEISEESLHTARDMLRRL 1058
>SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43)
Length = 453
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 118 LLFLTISPITVFSFAISTDPHQLCRNYF-YVFQNLFD*NS 2
L FL SP VFSF + P LC +F + Q L NS
Sbjct: 253 LFFLCWSPTVVFSFLVLFGPPGLCMKHFRFTSQFLVQSNS 292
>SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -3
Query: 254 HCFFDILLIPLGI-KKIFHIFFSIRK*FVLNKADRCCSSFNIKKQNFAFLNNIADYSILF 78
HC ++ + G+ + +F+ S+R N+A+R C F + A ++ + +
Sbjct: 285 HCGTELGFVQHGVFRNVFNAAASVRYVIKFNEANRLCQVFGARLATIAQVDQAWKFGLFE 344
Query: 77 CHF 69
C +
Sbjct: 345 CRY 347
>SB_59693| Best HMM Match : Phage_integr_N (HMM E-Value=2.3)
Length = 319
Score = 27.9 bits (59), Expect = 9.4
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +2
Query: 563 NFFLVSHLLGTY--FLSS---MAISTLL*VLNRKLPVTLLLSRK*VANLRKSC 706
+ FL + LL Y +L + +A STL LNR+ VTL K V+ LR SC
Sbjct: 122 DLFLRTRLLERYLDYLKTDRKLASSTLAKFLNREHAVTLYRDVKVVSQLRSSC 174
>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
Length = 2074
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 57 CGSVEMAKENTVIGDIVKKSKVLLLDIEGTTTSISFVKDK 176
CG+ AK+ I D KS V +L+ E TTT +S KD+
Sbjct: 29 CGNASTAKK---IFDRDVKSYVFILEGESTTTKMSIPKDE 65
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,676,095
Number of Sequences: 59808
Number of extensions: 484808
Number of successful extensions: 1126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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