Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10785
         (754 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53850.3 68418.m06693 haloacid dehalogenase-like hydrolase fa...    76   2e-14
At5g53850.1 68418.m06692 haloacid dehalogenase-like hydrolase fa...    76   2e-14
At5g53850.2 68418.m06691 haloacid dehalogenase-like hydrolase fa...    75   4e-14
At1g79320.1 68414.m09244 latex abundant protein, putative (AMC5)...    31   1.1  
At5g64030.1 68418.m08039 dehydration-responsive protein-related ...    30   1.4  
At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR...    29   2.5  
At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /...    29   3.3  
At5g02660.1 68418.m00202 hypothetical protein contains Pfam prof...    29   4.4  
At5g49900.1 68418.m06179 expressed protein contains Pfam domain ...    28   7.7  
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai...    28   7.7  

>At5g53850.3 68418.m06693 haloacid dehalogenase-like hydrolase
           family protein low similarity to enolase-phosphatase E-1
           enzyme [Klebsiella oxytoca] GI:401712; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 418

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 37/95 (38%), Positives = 54/95 (56%)
 Frame = +2

Query: 242 QRSSDALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQ 421
           Q     LR    ED  + V G V IP  D  KE  I  +V NV+  + +DRK+  LK+LQ
Sbjct: 324 QEDIKLLRAQVEEDLREGVTGAVPIPHADEGKEKVIAAMVSNVEAMIRADRKITALKELQ 383

Query: 422 GLIWKKGYDKGDIKGHVYDDVLPALEQWRQ*RVRR 526
           G IW+ G++  ++K  V++DV  ALE+W    ++R
Sbjct: 384 GHIWRTGFECDELKAIVFEDVADALEKWHSSGIKR 418



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = +3

Query: 123 LLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAV 254
           ++LDIEGTTT I+FV D LFPYA ENV   L+  +   + +E +
Sbjct: 284 IVLDIEGTTTPITFVTDVLFPYARENVGKHLNLTYHTAETQEDI 327


>At5g53850.1 68418.m06692 haloacid dehalogenase-like hydrolase
           family protein low similarity to enolase-phosphatase E-1
           enzyme [Klebsiella oxytoca] GI:401712; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 402

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 37/95 (38%), Positives = 54/95 (56%)
 Frame = +2

Query: 242 QRSSDALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQ 421
           Q     LR    ED  + V G V IP  D  KE  I  +V NV+  + +DRK+  LK+LQ
Sbjct: 308 QEDIKLLRAQVEEDLREGVTGAVPIPHADEGKEKVIAAMVSNVEAMIRADRKITALKELQ 367

Query: 422 GLIWKKGYDKGDIKGHVYDDVLPALEQWRQ*RVRR 526
           G IW+ G++  ++K  V++DV  ALE+W    ++R
Sbjct: 368 GHIWRTGFECDELKAIVFEDVADALEKWHSSGIKR 402



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = +3

Query: 123 LLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAV 254
           ++LDIEGTTT I+FV D LFPYA ENV   L+  +   + +E +
Sbjct: 268 IVLDIEGTTTPITFVTDVLFPYARENVGKHLNLTYHTAETQEDI 311


>At5g53850.2 68418.m06691 haloacid dehalogenase-like hydrolase
           family protein low similarity to enolase-phosphatase E-1
           enzyme [Klebsiella oxytoca] GI:401712; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 507

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 36/99 (36%), Positives = 56/99 (56%)
 Frame = +2

Query: 242 QRSSDALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQ 421
           Q     LR    ED  + V G V IP  D  KE  I  +V NV+  + +DRK+  LK+LQ
Sbjct: 308 QEDIKLLRAQVEEDLREGVTGAVPIPHADEGKEKVIAAMVSNVEAMIRADRKITALKELQ 367

Query: 422 GLIWKKGYDKGDIKGHVYDDVLPALEQWRQ*RVRRFTFT 538
           G IW+ G++  ++K  V++DV  ALE+W    ++ + ++
Sbjct: 368 GHIWRTGFECDELKAIVFEDVADALEKWHSSGIKVYIYS 406



 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 32/56 (57%), Positives = 39/56 (69%)
 Frame = +1

Query: 517 GQKIYIYSSGSVQAQKLLFGQSSAGDLLPFIDGHFDTAVGAKQEATSYTAIVEKIG 684
           G K+YIYSSGS  AQKLLFG +  GDL  +I G FDT +G K+E+ SY  I E +G
Sbjct: 399 GIKVYIYSSGSRLAQKLLFGNTDYGDLRKYISGFFDTTIGNKKESRSYKEIKETLG 454



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = +3

Query: 123 LLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAV 254
           ++LDIEGTTT I+FV D LFPYA ENV   L+  +   + +E +
Sbjct: 268 IVLDIEGTTTPITFVTDVLFPYARENVGKHLNLTYHTAETQEDI 311


>At1g79320.1 68414.m09244 latex abundant protein, putative (AMC5) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 368

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +3

Query: 105 VKK-SKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAV 254
           VKK   V+L +++ TTT+I  V D++    E   ++FL+ Q   +DVK A+
Sbjct: 223 VKKFMNVILSNLQETTTTIQTVSDEVLGSVENLAQEFLE-QKLSDDVKPAI 272


>At5g64030.1 68418.m08039 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 829

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 323 EDASKEDQIEGLVKNVKWQ--MSSDRKVAPLKQLQGLIWK 436
           +DA    Q+EG+VK +KW+  M+  ++   L  +Q  IW+
Sbjct: 778 DDAETIQQVEGMVKAMKWEVRMTYSKEKEGLLSVQKSIWR 817


>At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1219

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 152  CCSSFNIKK--QNFAFLNNIADYSILFCHFDRSTPALPELL 36
            C S  NI+   ++F  LNN+  + + FC   +S P LP+ L
Sbjct: 884  CLSGNNIENLPESFNQLNNLKWFDLKFCKMLKSLPVLPQNL 924


>At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase PG1 [Glycine max]
           GI:5669846; contains PF00295: Glycosyl hydrolases family
           28
          Length = 444

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 489 GSTSSYTCPLMSPLS*PFFQISPWSCFRGATLRSDDICHLTF 364
           GS +SY     S +S    ++SPW C    T    ++C  TF
Sbjct: 403 GSLNSYKTWKCSDVSGTSLKVSPWPCSELRTTGGSNLCSSTF 444


>At5g02660.1 68418.m00202 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 629

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 20  ILKYIKVVPAELVWICRNGKREYCNRRYC 106
           +LKY+K     + WICR   +++  R+ C
Sbjct: 201 VLKYVKKNLKWIAWICRTCSKKFSTRQAC 229


>At5g49900.1 68418.m06179 expressed protein contains Pfam domain
           PF04685: Protein of unknown function, DUF608
          Length = 957

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 66  VEMAKENTVIGDIVKKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFL 215
           +++  +N     +++K    L ++  +TTS S    KL    EEN+  FL
Sbjct: 481 IDVPHQNDTAVSVLEKMASTLEELHASTTSNSAFGTKLLEEGEENIGHFL 530


>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
           Pfam profile: PF00628: PHD-finger
          Length = 704

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 582 ICWGPTSFHRWPFRHCCRC*TGSYQLHCYCRENRLQT*GNLVLTDIEKEAEAARTS 749
           + +G + F RW ++ CC    GS+ +     EN ++  G+L +  IE +    R S
Sbjct: 201 VAYGHSWFGRWGYKFCC----GSFGVTKNEYENAIEALGSLEIDQIEFDFGELRQS 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,083,409
Number of Sequences: 28952
Number of extensions: 351360
Number of successful extensions: 957
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)