Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10784
         (565 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    28   0.048
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   1.8  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    22   4.2  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   7.3  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 0.048
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +3

Query: 219 ELPRNLKVMMKRKKI-----KMGSSRSQYRL*AEYQTTRPSATTTDNKHHWHKGN 368
           EL RNL +  ++ KI     +M + ++  R  A+ Q    +AT   N HH H G+
Sbjct: 275 ELARNLNLTERQVKIWFQNRRMKNKKNSQRQAAQQQNNNNAATNNQN-HHHHAGH 328


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 134 PHSKILSPILMDHI 93
           PH   L+PIL DHI
Sbjct: 184 PHQGPLTPILYDHI 197


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/41 (21%), Positives = 20/41 (48%)
 Frame = -1

Query: 508 YLYTIYSIDYNCISVHLMIIIQHLQLNDVSHVRSLVFLVKI 386
           +LY    +   C   +    I H + N ++ + SL ++++I
Sbjct: 136 FLYIFTYLSVTCYVTYAWSPIDHTESNIINDMCSLYYILQI 176


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 197 SKIDFISGVAKKPESDDEKKENQ 265
           S ++ +   AKK ESD     N+
Sbjct: 445 SNVEVVQEEAKKEESDSNNNNNK 467


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,844
Number of Sequences: 336
Number of extensions: 1583
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)