Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10784
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like |Schiz...    37   0.002
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    27   1.9  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    27   1.9  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    27   2.5  
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa...    25   7.7  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    25   7.7  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   7.7  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   7.7  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   7.7  

>SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 2   DKKNFRNPSIYEKLIQFCDINE-LDTNYPPEIYDPLKWGKESYYEELSKVQ 151
           + +NFRNP + + L  F DI E   T    +++DP  + K  Y   LSK Q
Sbjct: 69  ENENFRNPKLLDNLQDFLDIKEPRGTMISKDMWDPTDFHKNVYASALSKSQ 119


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 32  YEKLI-QFCDINELDTNYPPEIYDPLKW 112
           +EKL  +FCD  + D +   E+YD LK+
Sbjct: 655 WEKLFSEFCDSEKADPSKVSELYDTLKY 682


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 298 KPNIKQPGLVQQPLTTNI 351
           K NIKQPGL + PL T++
Sbjct: 383 KMNIKQPGLSEAPLLTDL 400


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 366 NCHCCFWIFTKKTKDLT*ETSFSCKC*MMIIRWTE 470
           N  CC +  TK  KDL   T FS    + I +W +
Sbjct: 266 NYLCCSFSLTKAEKDLVRATEFSNSMLISIEKWAK 300


>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
           Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +1

Query: 250 KERKSKWDQAAPNIGSKPNIKQPGLVQQPLTTNITG--TKGTVIAAFGSLPKKP 405
           K  + +W+     IG+ PN+  P    + +    +G  T    +AAF  LP KP
Sbjct: 207 KNERGQWEVQYRVIGNPPNVAVPTHFFKVIIAEKSGEPTSSPSVAAF-VLPNKP 259


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 219 ELPRNLKVMMKRKKIKMGSSRSQ 287
           ELP N+K+ +K K + + SSR++
Sbjct: 53  ELPVNIKLHVKHKGMSISSSRNE 75


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 295 SKPNIKQ-PGLVQQPLTTNITGTKGTVIAAFGSLPK 399
           S P++ Q PG + Q +T  I  T+G  + AF +LP+
Sbjct: 601 SYPSLLQIPGFLIQFITPIIKCTRGNQVQAFYTLPE 636


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -1

Query: 511 NYLYTIYSIDYNCISVHLMIIIQHLQLNDVSHVRSLVFL 395
           N+L    S+    +   + ++++ +++N  SHV+ L FL
Sbjct: 300 NHLVRFSSLYIFIVLSQIFVLLRQMRINSPSHVQRLSFL 338


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 38  KLIQFCDINELDTNYPPEIYDPLK 109
           K+++ CDI E  + +PPE  + L+
Sbjct: 121 KILKLCDIWEKASTFPPEKLESLR 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,637
Number of Sequences: 5004
Number of extensions: 27315
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)