Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10784
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0781 + 31962661-31963089,31963174-31963228,31964310-319645...    45   5e-05
05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722     31   0.84 

>01_06_0781 +
           31962661-31963089,31963174-31963228,31964310-31964557,
           31965080-31965281,31965793-31965912,31965976-31966100,
           31966182-31966288,31966726-31966792
          Length = 450

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 18/80 (22%), Positives = 42/80 (52%)
 Frame = +2

Query: 2   DKKNFRNPSIYEKLIQFCDINELDTNYPPEIYDPLKWGKESYYEELSKVQXXXXXXXXXX 181
           ++K++RNP   +  +++ +I+++ T +  +++DP  + +  YY+E+ +            
Sbjct: 266 NRKDYRNPDFLQHAVRYQEIDQIGTCFSKDVFDPYGYDRSDYYDEI-EADMKREVERKEL 324

Query: 182 XXXXXSKIDFISGVAKKPES 241
                 K+DFI+G  + P S
Sbjct: 325 EKKKSGKVDFITGGVQAPIS 344


>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
          Length = 740

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +1

Query: 286 NIGSKPNIKQPGLVQQPLTTNITGTKGTVIAAFGSLPKKPKI*REKRHSAVNVE**SLDG 465
           ++ S P I++  LV +  T  I G+   +     SL +  +  +  RH+   V+  S  G
Sbjct: 411 SVDSGPQIRKDELVDKSFTEIIEGSGNNIEKLSSSLQRNYESVQNARHNEDGVDESSDGG 470

Query: 466 LRYNYNLC-YKLYIDNLS 516
             Y+ N C Y+ YI+  S
Sbjct: 471 PGYHVNACSYEHYINTPS 488


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,004,714
Number of Sequences: 37544
Number of extensions: 152710
Number of successful extensions: 368
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)