Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10784
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42351| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   7e-06
SB_32755| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.86 
SB_7057| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_26101| Best HMM Match : Protamine_P1 (HMM E-Value=9.9)              28   6.1  
SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)                 28   6.1  

>SB_42351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = +2

Query: 5   KKNFRNPSIYEKLIQFCDINELDTNYP 85
           +K+FRNPSIYEKLI +C+I E  TNYP
Sbjct: 154 RKDFRNPSIYEKLISYCNIQENGTNYP 180


>SB_32755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 701

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 250 KERKSKWDQAAPNIGSKPNIKQPGLVQQPLTTNITGTKGTVIAAFGSLPKKPK 408
           KE  S WD   P +    +  +PG +  PL+  +TG +    +   SLP   +
Sbjct: 298 KESTSSWDDIQPTVVIIDSEFEPGKIMSPLSRTVTGCEDGNDSLGTSLPSSSR 350


>SB_7057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 258 KIKMGSSRSQYRL*AEYQTTRPSATTTDNKHHWHKGNCHCCF 383
           K+  G+S  +Y   AEYQ    S  T     H H   C  C+
Sbjct: 75  KLHPGTSEQRYMYGAEYQVNDRSPFTLGKSLHDHDVPCAVCY 116


>SB_26101| Best HMM Match : Protamine_P1 (HMM E-Value=9.9)
          Length = 132

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 134 PHSKILSPILMDHIFLEDNLYQ 69
           PH++ LSP   +HIF E N+ Q
Sbjct: 94  PHTRTLSPNHEEHIFFEGNINQ 115


>SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)
          Length = 806

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 53  CDINELDTNYPPEIYDPLKWGKESYYEEL 139
           CDI   D N PP+  D   W   + Y EL
Sbjct: 102 CDIVLYDINGPPDQVDQATWAVSALYAEL 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,798,511
Number of Sequences: 59808
Number of extensions: 182671
Number of successful extensions: 485
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)