Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10784
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC091125-5|AAK27884.2|  297|Caenorhabditis elegans Hypothetical ...    31   0.43 
U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical p...    27   9.3  
AC024859-2|AAK29971.2|  502|Caenorhabditis elegans Set (trithora...    27   9.3  

>AC091125-5|AAK27884.2|  297|Caenorhabditis elegans Hypothetical
           protein Y67D2.7 protein.
          Length = 297

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 8   KNFRNPSIYEKLIQFCDINELDTNYPPEIYDPLKWGKESYYEELSKVQ 151
           + + NP  Y   I   +I+E  TN+   I+DP  +    +Y+ ++  Q
Sbjct: 239 QQYNNPMSYTTFIDAFEIDEKGTNFAKNIFDPHVFPDNCFYDAIADEQ 286


>U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical
           protein R12C12.1a protein.
          Length = 979

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 250 KERKSKWDQAAPNIGSKPNIKQPGLVQQPL 339
           K R+ +W+ A P IG+ P+ +    +Q P+
Sbjct: 472 KLREERWEVACPLIGNSPHSRSSLFLQHPV 501


>AC024859-2|AAK29971.2|  502|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 27
           protein.
          Length = 502

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 319 GLVQQPLTTNITGTKGTVIAAFGSLPKKPKI*REKRHSAVNVE 447
           G+ +  +T   T T G  + A G +PK   + R  RH+ + ++
Sbjct: 85  GIARNNVTIGSTKTAGLSLQATGPIPKSHIVARVPRHAMITLD 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,108,614
Number of Sequences: 27780
Number of extensions: 147909
Number of successful extensions: 385
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)