Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10784
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29220.1 68414.m03574 transcriptional regulator family protei...    30   1.2  
At1g54115.1 68414.m06169 cation exchanger, putative                    27   8.7  

>At1g29220.1 68414.m03574 transcriptional regulator family protein
           similar to Transcriptional regulator protein HCNGP
           (Swiss-Prot:Q02614) [Mus musculus]
          Length = 351

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/72 (16%), Positives = 33/72 (45%)
 Frame = +2

Query: 2   DKKNFRNPSIYEKLIQFCDINELDTNYPPEIYDPLKWGKESYYEELSKVQXXXXXXXXXX 181
           ++K +RNP      + + DI+++ + +  +++DP  +    + + + ++           
Sbjct: 168 NRKEYRNPDFLLHAVSYQDIDQIGSCFSKDVFDPSGYDPSDFCDAI-EIDMKNERERKEQ 226

Query: 182 XXXXXSKIDFIS 217
                 K+DF+S
Sbjct: 227 ESKKNQKLDFVS 238


>At1g54115.1 68414.m06169 cation exchanger, putative
          Length = 644

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 14  FRNPSIYEKLIQFCDINELDTNY-PPEIYDPL-KW 112
           F +PS+ E +  +  + ELDT   PP ++D L +W
Sbjct: 313 FSSPSVEEDIPMYSPLMELDTGEGPPRLHDSLPQW 347


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,558,759
Number of Sequences: 28952
Number of extensions: 137290
Number of successful extensions: 401
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)