Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10783
(604 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 163 3e-39
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 90 3e-17
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 83 4e-15
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 77 4e-13
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 76 7e-13
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 74 2e-12
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 73 5e-12
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 72 1e-11
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 71 2e-11
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 71 3e-11
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 70 5e-11
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 66 6e-10
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 66 6e-10
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 63 6e-09
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 61 2e-08
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 61 2e-08
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 60 5e-08
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 60 5e-08
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 58 1e-07
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 58 2e-07
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 56 6e-07
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 54 2e-06
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 52 8e-06
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 51 2e-05
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 50 6e-05
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 48 1e-04
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 48 1e-04
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 3e-04
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 47 3e-04
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 46 5e-04
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 46 0.001
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 45 0.001
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 45 0.002
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 45 0.002
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 43 0.005
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 42 0.008
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 42 0.008
UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1; Lentisph... 42 0.015
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 42 0.015
UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4; Chloroflexac... 41 0.020
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 41 0.026
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 41 0.026
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 41 0.026
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 41 0.026
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 40 0.034
UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1; ... 40 0.045
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 40 0.045
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 40 0.045
UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas ... 40 0.045
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 40 0.045
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 40 0.045
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 39 0.079
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 39 0.10
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 38 0.18
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 38 0.18
UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n... 38 0.18
UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11; Mollicu... 38 0.24
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 37 0.32
UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25; Bacteri... 37 0.32
UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia... 37 0.32
UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyosteliu... 36 0.56
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 0.56
UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86; Bacteri... 36 0.56
UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35; Bacteri... 36 0.56
UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 0.56
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 36 0.74
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 36 0.97
UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 0.97
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 0.97
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 35 1.3
UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular or... 35 1.7
UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1; Pl... 35 1.7
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 35 1.7
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 35 1.7
UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5; Alphapro... 35 1.7
UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella ve... 34 2.3
UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep... 34 2.3
UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1... 34 2.3
UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;... 34 3.0
UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative; ... 33 5.2
UniRef50_Q18V20 Cluster: Oligopeptide/dipeptide ABC transporter,... 32 9.1
UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2; ... 32 9.1
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 163 bits (396), Expect = 3e-39
Identities = 76/85 (89%), Positives = 82/85 (96%)
Frame = +2
Query: 254 ILDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIP 433
+LDE +MKLDY+LGLKIEDFLERRLQTQVFK GLAKSIHHAR+LIRQRHIRVRKQVVNIP
Sbjct: 86 VLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIP 145
Query: 434 SFIVRLDSGKHIDFSLKSPFGGGRP 508
SFIVRLDS KHIDFSL+SP+GGGRP
Sbjct: 146 SFIVRLDSQKHIDFSLRSPYGGGRP 170
Score = 149 bits (362), Expect = 4e-35
Identities = 70/78 (89%), Positives = 76/78 (97%)
Frame = +3
Query: 21 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 200
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKD
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 201 PKRLFEGNALLRRLVRIG 254
P+RLFEGNALLRRLVRIG
Sbjct: 68 PRRLFEGNALLRRLVRIG 85
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 90.2 bits (214), Expect = 3e-17
Identities = 48/102 (47%), Positives = 70/102 (68%)
Frame = +2
Query: 254 ILDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIP 433
IL Q KL++VL LK E+ LERRLQT V++ G AKSIHHAR+LIR + I+V KQVV++P
Sbjct: 85 ILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQVVDVP 144
Query: 434 SFIVRLDSGKHIDFSLKSPFGGGRPDVSRGRTSARDRVAERQ 559
SF+VR++S I + +P P+++ GR ++ A ++
Sbjct: 145 SFLVRVESEPLIQLADNTPL--TNPEIN-GRRKRKNNHAGKE 183
Score = 89.0 bits (211), Expect = 7e-17
Identities = 40/76 (52%), Positives = 55/76 (72%)
Frame = +3
Query: 27 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 206
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDPK
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPK 68
Query: 207 RLFEGNALLRRLVRIG 254
RL EG ALLRRL +G
Sbjct: 69 RLLEGAALLRRLHNLG 84
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 83.4 bits (197), Expect = 4e-15
Identities = 42/77 (54%), Positives = 54/77 (70%)
Frame = +3
Query: 24 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 203
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV +ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 204 KRLFEGNALLRRLVRIG 254
+R+FEG ALLR + R G
Sbjct: 59 RRIFEGEALLRHMNRYG 75
Score = 68.9 bits (161), Expect = 9e-11
Identities = 33/52 (63%), Positives = 38/52 (73%)
Frame = +2
Query: 248 YWILDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 403
Y +L E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +LIRQ HI
Sbjct: 74 YGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 76.6 bits (180), Expect = 4e-13
Identities = 41/92 (44%), Positives = 59/92 (64%)
Frame = +2
Query: 278 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 457
L+ VL L I +LERRLQ +VF AGLAKS+HHAR+LI R I ++ Q+V++P F+VR D
Sbjct: 98 LNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADK 157
Query: 458 GKHIDFSLKSPFGGGRPDVSRGRTSARDRVAE 553
I+++ S +G +G+ A +V E
Sbjct: 158 EPLIEYNPYSRYG------DKGKKKAEAKVGE 183
Score = 64.5 bits (150), Expect = 2e-09
Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Frame = +3
Query: 27 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 206
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT +P+
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPE 64
Query: 207 RL-FEGNALLRRLVRIG 254
+ G +LLRRL++ G
Sbjct: 65 DIPINGRSLLRRLMKYG 81
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 75.8 bits (178), Expect = 7e-13
Identities = 33/58 (56%), Positives = 44/58 (75%)
Frame = +3
Query: 15 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 188
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLAL 61
Score = 57.6 bits (133), Expect = 2e-07
Identities = 30/72 (41%), Positives = 43/72 (59%)
Frame = +2
Query: 278 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 457
+D VL LK+ LERRLQT V++ GLA+S AR L+ HI + + V +P ++V
Sbjct: 94 IDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGE 153
Query: 458 GKHIDFSLKSPF 493
I ++ KSPF
Sbjct: 154 ETTISYAGKSPF 165
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 74.1 bits (174), Expect = 2e-12
Identities = 36/83 (43%), Positives = 56/83 (67%)
Frame = -1
Query: 505 TTSTEWRFQREVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQ 326
+++TEWR EVNVL R Q+ ++ WDV +LL ++N+ L DQ+S +++ L Q L LQ
Sbjct: 24 SSTTEWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVVNRLGQTQLVDLGLQ 83
Query: 325 TTLQEVLNLQTKHIIEFHLFFIQ 257
++ QE+ NLQ++ II+ L F Q
Sbjct: 84 SSFQEIFNLQSQDIIQLLLVFRQ 106
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 72.9 bits (171), Expect = 5e-12
Identities = 38/66 (57%), Positives = 42/66 (63%)
Frame = -2
Query: 507 GRPPPNGDFREKSMCLPESRRTINDGMFTTCLRTRICLCRIKILA*WMDFARPALNTCVC 328
GRPPP+G+ KSMC S RT G FT CL TRI RIK A D ARP+L T VC
Sbjct: 53 GRPPPSGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKTSVC 112
Query: 327 RRRSKK 310
+RRSKK
Sbjct: 113 KRRSKK 118
Score = 34.7 bits (76), Expect = 1.7
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -3
Query: 134 APYFTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL 30
AP +LVA+ L+DDLQL V+ L +RT+R RL
Sbjct: 167 APQLSLVAKAELTDDLQLGVEAILLERTSRLLERL 201
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 71.7 bits (168), Expect = 1e-11
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +3
Query: 15 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 191
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQ 62
Score = 56.0 bits (129), Expect = 6e-07
Identities = 29/71 (40%), Positives = 41/71 (57%)
Frame = +2
Query: 278 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 457
+D VL LK+E L+RRLQTQV++ G A+S AR I HI + + V IP + V
Sbjct: 94 IDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRVTIPGYTVSAKE 153
Query: 458 GKHIDFSLKSP 490
+ I ++ SP
Sbjct: 154 QEEISYAGSSP 164
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 70.9 bits (166), Expect = 2e-11
Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Frame = +2
Query: 227 PSTSSGSYWI------LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 388
PS S G W ++ L+ ++ + + L RRLQT V + L+K+IH ARILI
Sbjct: 72 PSQSYGILWFCYKYNFMNNMTFCLESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARILI 131
Query: 389 RQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 487
+HI+V+ Q+VN PSF+VR D+ I FSL S
Sbjct: 132 MHKHIQVKNQIVNKPSFLVRKDNEIFISFSLNS 164
Score = 60.5 bits (140), Expect = 3e-08
Identities = 24/58 (41%), Positives = 42/58 (72%)
Frame = +3
Query: 24 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEK 197
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAK 67
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 70.5 bits (165), Expect = 3e-11
Identities = 38/82 (46%), Positives = 50/82 (60%)
Frame = +2
Query: 248 YWILDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 427
Y IL + LD VL L +ED LERRLQT VF+ GLA++ AR LI HI V +VV
Sbjct: 81 YGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVT 140
Query: 428 IPSFIVRLDSGKHIDFSLKSPF 493
PS++V ++ I ++ SPF
Sbjct: 141 APSYMVTVEEEDKISYAKNSPF 162
Score = 58.0 bits (134), Expect = 2e-07
Identities = 24/54 (44%), Positives = 37/54 (68%)
Frame = +3
Query: 24 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 185
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS 61
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 69.7 bits (163), Expect = 5e-11
Identities = 39/75 (52%), Positives = 48/75 (64%)
Frame = +2
Query: 284 YVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 463
+ GL+I F E++LQTQVF+ L KSI HA +L+ HIR+ KQVV+I F V LDS K
Sbjct: 102 WAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSRK 160
Query: 464 HIDFSLKSPFGGGRP 508
H DF GGG P
Sbjct: 161 HTDFFRHCLNGGGYP 175
Score = 58.4 bits (135), Expect = 1e-07
Identities = 30/45 (66%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Frame = +3
Query: 123 EVWRVKYTLARIRKAARE-LLTLEEKDPKRLFEGNALLRRLVRIG 254
EVWRVK+TL +IRKA E LL L EKDP+ LFE N LLR+LV G
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLRQLVHTG 85
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 66.1 bits (154), Expect = 6e-10
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +3
Query: 15 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL-LTLE 191
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLR 63
Query: 192 EKDPKRLFEGNALLRRLVR 248
D + +++RL R
Sbjct: 64 ASDANAQKQLERMIKRLSR 82
Score = 58.4 bits (135), Expect = 1e-07
Identities = 39/102 (38%), Positives = 50/102 (49%)
Frame = +2
Query: 248 YWILDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 427
Y IL +K LD VL L +E+ L+RRLQT VFK LA S AR LI HI V + V
Sbjct: 83 YKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGRRVT 141
Query: 428 IPSFIVRLDSGKHIDFSLKSPFGGGRPDVSRGRTSARDRVAE 553
+P +V I + SP + + S +RV E
Sbjct: 142 VPGMLVEAQYEDTIAYYENSPIANELHPIRQALLSPAERVKE 183
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 66.1 bits (154), Expect = 6e-10
Identities = 36/80 (45%), Positives = 49/80 (61%)
Frame = +2
Query: 254 ILDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIP 433
I+++ LD +LGL E++LERRLQT V+K GLA++I+ AR LI HI + + V P
Sbjct: 82 IIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSP 141
Query: 434 SFIVRLDSGKHIDFSLKSPF 493
+IV IDF SPF
Sbjct: 142 GYIVMRGEEDLIDFYPTSPF 161
Score = 52.0 bits (119), Expect = 1e-05
Identities = 27/80 (33%), Positives = 44/80 (55%)
Frame = +3
Query: 15 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 194
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPP 63
Query: 195 KDPKRLFEGNALLRRLVRIG 254
+ R L+++L R+G
Sbjct: 64 AE--RSTREKQLIQKLYRMG 81
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 62.9 bits (146), Expect = 6e-09
Identities = 30/63 (47%), Positives = 42/63 (66%)
Frame = +2
Query: 257 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 436
+++ ++LD +L L + LERRLQT V++ GLAKSIHHAR LI H+ V + V P
Sbjct: 85 IEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPG 144
Query: 437 FIV 445
F+V
Sbjct: 145 FLV 147
Score = 50.4 bits (115), Expect = 3e-05
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Frame = +3
Query: 45 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDP 203
P++ + K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAP 70
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 61.3 bits (142), Expect = 2e-08
Identities = 32/72 (44%), Positives = 46/72 (63%)
Frame = +2
Query: 275 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 454
+LD VL L ++D LERRLQT + + GLAK++ AR I HI V +VV+ PS++V+ +
Sbjct: 87 ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKE 146
Query: 455 SGKHIDFSLKSP 490
I+F SP
Sbjct: 147 EEDKIEFVPFSP 158
Score = 43.6 bits (98), Expect = 0.004
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +3
Query: 45 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLF-EG 221
P P++K RL E +++ EYGL+NKRE+W + T+AR +A L ++ + + E
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQAAGQDISEEK 69
Query: 222 NALLRRLVRIGYWMKN 269
L +L ++G +N
Sbjct: 70 ERFLTKLKKLGVLSEN 85
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 60.9 bits (141), Expect = 2e-08
Identities = 35/81 (43%), Positives = 45/81 (55%)
Frame = +2
Query: 248 YWILDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 427
Y IL ++ LD VL L +E LERRLQT VF+ GLA + AR I HI V + +N
Sbjct: 80 YGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGKKIN 139
Query: 428 IPSFIVRLDSGKHIDFSLKSP 490
PS++V L I + SP
Sbjct: 140 APSYLVPLVEEDAISYMPNSP 160
Score = 54.4 bits (125), Expect = 2e-06
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = +3
Query: 15 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 185
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLIS 60
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 59.7 bits (138), Expect = 5e-08
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +3
Query: 126 VWRVKYTLARIRKAARELLTLEEKDPKRLF 215
VWRVK+TLA+IRKAARELLTL+EKDP+RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 59.7 bits (138), Expect = 5e-08
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +3
Query: 15 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 182
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLL 59
Score = 58.4 bits (135), Expect = 1e-07
Identities = 29/71 (40%), Positives = 41/71 (57%)
Frame = +2
Query: 278 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 457
+D +L LK E+ LERRLQTQV + GLA+++ AR I HI + + IP +V +
Sbjct: 98 VDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKED 157
Query: 458 GKHIDFSLKSP 490
HI + SP
Sbjct: 158 EMHIGYYGSSP 168
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 58.4 bits (135), Expect = 1e-07
Identities = 31/80 (38%), Positives = 47/80 (58%)
Frame = +3
Query: 15 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 194
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L +
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQ 63
Query: 195 KDPKRLFEGNALLRRLVRIG 254
+ +R + LLR L RIG
Sbjct: 64 EVRER--KEPVLLRSLARIG 81
Score = 50.4 bits (115), Expect = 3e-05
Identities = 33/96 (34%), Positives = 46/96 (47%)
Frame = +2
Query: 266 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 445
K LD VL L++ D L RRLQT V K + + AR + HI + +VV IPS+ V
Sbjct: 85 KDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISDRVVTIPSYTV 144
Query: 446 RLDSGKHIDFSLKSPFGGGRPDVSRGRTSARDRVAE 553
++ I + S F R +AR+ AE
Sbjct: 145 YVEEEGDIKLTGGSAFATILEKSKRAEAAAREAAAE 180
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 57.6 bits (133), Expect = 2e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +3
Query: 15 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 182
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALL 59
Score = 56.0 bits (129), Expect = 6e-07
Identities = 26/76 (34%), Positives = 44/76 (57%)
Frame = +2
Query: 263 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 442
++ KL+ VL LK++D +ERRLQT +++ G A SI AR I HI + + + +P ++
Sbjct: 91 KEDAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGRKITVPGYL 150
Query: 443 VRLDSGKHIDFSLKSP 490
V + + + SP
Sbjct: 151 VLKSEEDMLSYYVGSP 166
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 56.0 bits (129), Expect = 6e-07
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = +2
Query: 275 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 454
KL+ VL L +ED L RRLQ+ VFK GL+ + AR+ + HI + + +N P +V
Sbjct: 88 KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKA 147
Query: 455 SGKHIDF 475
++IDF
Sbjct: 148 DEENIDF 154
Score = 54.0 bits (124), Expect = 3e-06
Identities = 27/80 (33%), Positives = 46/80 (57%)
Frame = +3
Query: 30 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 209
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L ++ + R
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--R 66
Query: 210 LFEGNALLRRLVRIGYWMKN 269
+ LL LVR G+ N
Sbjct: 67 ADKEKELLDHLVRAGFISPN 86
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 54.4 bits (125), Expect = 2e-06
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +2
Query: 260 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 367
D ++ KLDYVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 52.4 bits (120), Expect = 8e-06
Identities = 28/81 (34%), Positives = 41/81 (50%)
Frame = +3
Query: 12 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 191
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL--- 59
Query: 192 EKDPKRLFEGNALLRRLVRIG 254
G + RL RIG
Sbjct: 60 --GQTGTVSGEEFVARLQRIG 78
Score = 52.0 bits (119), Expect = 1e-05
Identities = 29/74 (39%), Positives = 43/74 (58%)
Frame = +2
Query: 254 ILDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIP 433
IL E++ +LD VL L++ D LERRLQT V++ GLA ++ AR + H+ V V P
Sbjct: 79 ILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEP 137
Query: 434 SFIVRLDSGKHIDF 475
S+ V + + F
Sbjct: 138 SYTVPVSEENTLAF 151
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 51.2 bits (117), Expect = 2e-05
Identities = 29/61 (47%), Positives = 37/61 (60%)
Frame = +2
Query: 263 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 442
E L+ VL + FLERRLQT VFK GLA++I AR LI I V + V+IP ++
Sbjct: 82 ENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLITHGFIAVNMKRVSIPGYM 141
Query: 443 V 445
V
Sbjct: 142 V 142
Score = 40.3 bits (90), Expect = 0.034
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +3
Query: 30 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 185
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R R LL+
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLS 60
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 49.6 bits (113), Expect = 6e-05
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +2
Query: 407 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGG 499
V +Q+VNIPSFIVRL+S KHI FSL SP GG
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSPLGG 57
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 48.4 bits (110), Expect = 1e-04
Identities = 27/66 (40%), Positives = 40/66 (60%)
Frame = +2
Query: 254 ILDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIP 433
I +E KL V GL + ++LERRL+ V++ G AK+ AR ++ HI V + VNI
Sbjct: 67 IYEEAARKLG-VTGLTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAVNGRRVNIA 125
Query: 434 SFIVRL 451
SF V++
Sbjct: 126 SFRVKV 131
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 48.4 bits (110), Expect = 1e-04
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +2
Query: 293 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 472
G + LERRL VF+AG A ++ AR L+ RH+R+ + VNIPS +RL+ G I
Sbjct: 85 GETLLQLLERRLDNVVFRAGFAPTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEIT 142
Query: 473 FSLKS 487
+S
Sbjct: 143 IKPES 147
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 3e-04
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +3
Query: 24 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 182
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 47.2 bits (107), Expect = 3e-04
Identities = 19/53 (35%), Positives = 34/53 (64%)
Frame = +2
Query: 290 LGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 448
+G + LERRL +++AG SI+ AR+L+ +H+ V ++ NI S++V+
Sbjct: 123 IGDNLIKMLERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYLVQ 175
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 46.4 bits (105), Expect = 5e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +2
Query: 287 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 439
+ G + F+E RL V++ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 82 ITGENLLKFIEARLDNTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 45.6 bits (103), Expect = 0.001
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +2
Query: 266 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 445
K K+ G + FLE RL VF+ +A +I AR LI HIRV + VNIPS++
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMC 151
Query: 446 R 448
+
Sbjct: 152 K 152
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 45.2 bits (102), Expect = 0.001
Identities = 28/75 (37%), Positives = 39/75 (52%)
Frame = +2
Query: 287 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 466
V G + LERRL VF+AG A S AR ++R +HI + + V+IPS+ ++ G
Sbjct: 88 VAGENLLILLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSY--QVSEGDV 145
Query: 467 IDFSLKSPFGGGRPD 511
I KS G D
Sbjct: 146 ISLREKSRANAGVVD 160
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +2
Query: 266 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 445
K +++ + G + LE RL +F+ GLA++ AR ++ +H+ V + VNIPS++V
Sbjct: 53 KAKQMEGMTGENLMRILESRLDNVIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLV 112
Query: 446 R 448
+
Sbjct: 113 K 113
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 44.8 bits (101), Expect = 0.002
Identities = 27/67 (40%), Positives = 36/67 (53%)
Frame = +2
Query: 287 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 466
V G + LERRL V++ G + S AR L+ H+ V + VNIPSF+V G
Sbjct: 82 VTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV--SPGDQ 139
Query: 467 IDFSLKS 487
I+F KS
Sbjct: 140 IEFRQKS 146
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 43.2 bits (97), Expect = 0.005
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = +2
Query: 293 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 472
G + +LERRL V++ G A + AR L+ H+ V + VNIPS++V + G I+
Sbjct: 89 GEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV--EPGDVIE 146
Query: 473 FSLKS 487
KS
Sbjct: 147 IKEKS 151
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 42.3 bits (95), Expect = 0.008
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = +2
Query: 314 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 487
LE RL V++ G A SI AR ++ H V + VNIPSF RL+ G + KS
Sbjct: 86 LESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF--RLNIGDEVVLREKS 141
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 42.3 bits (95), Expect = 0.008
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = +2
Query: 263 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 439
+K +KL G + LE RL V++ GLA +I +R LI HI V +VVNIPSF
Sbjct: 74 KKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF 132
>UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S4 - Lentisphaera araneosa HTCC2155
Length = 205
Score = 41.5 bits (93), Expect = 0.015
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = +2
Query: 263 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 442
++ KL V G + LE RL V++ G A + AR L+ HIR+ + NIPS+
Sbjct: 77 DRAAKLSGVTGNNLMVLLEARLDNVVYRLGFAPTRSAARQLVGHGHIRINGRRCNIPSYS 136
Query: 443 VR 448
VR
Sbjct: 137 VR 138
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 41.5 bits (93), Expect = 0.015
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +2
Query: 293 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 439
G + LE RL +F+ G+A +I AR L+ RHI + V+IPS+
Sbjct: 76 GQVLLQLLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4;
Chloroflexaceae|Rep: Ribosomal protein S4 - Roseiflexus
sp. RS-1
Length = 206
Score = 41.1 bits (92), Expect = 0.020
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +2
Query: 263 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 442
EK + G + LERRL V++ G A + AR L+ HI V + NIPS+
Sbjct: 75 EKAQRFPGETGAYLFILLERRLDNVVYRLGFATTRAQARQLVSHGHITVNGRKTNIPSYT 134
Query: 443 VRL 451
VR+
Sbjct: 135 VRV 137
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 40.7 bits (91), Expect = 0.026
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +2
Query: 257 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 436
L+ KQ + G LE RL +F G+A +I AR L+ RHI V +V+IPS
Sbjct: 35 LEAKQRRTRGSTGQVPLQLLEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPS 94
Query: 437 F 439
+
Sbjct: 95 Y 95
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 40.7 bits (91), Expect = 0.026
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = +2
Query: 431 PSFIVRLDSGKHIDFSLKSPFGGGRP 508
PSF+VR+DS K D SL SP GGGRP
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGGGRP 49
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 40.7 bits (91), Expect = 0.026
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = +3
Query: 93 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGYWMKNR 272
I +YGLR++ E + + ++RK A L L+E DP R L+ RL +G +KNR
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVRTTITKKLVGRLYSVGV-IKNR 90
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 40.7 bits (91), Expect = 0.026
Identities = 25/65 (38%), Positives = 36/65 (55%)
Frame = +2
Query: 293 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 472
G+ LERRL V++ GLA + AR L+ HI V + V+IPS+ V++ G+ I
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILVDGKRVDIPSYEVKV--GQEIS 141
Query: 473 FSLKS 487
KS
Sbjct: 142 LRDKS 146
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 40.3 bits (90), Expect = 0.034
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +2
Query: 287 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 448
+ G + LE RL V++ G++ + AR L+ +HI V ++VNIPS+ ++
Sbjct: 81 ITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSYSLK 134
>UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 198
Score = 39.9 bits (89), Expect = 0.045
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +2
Query: 266 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 445
K K++ V G + LE RL VF+ G A++ AR +R H V + V+IPS+ V
Sbjct: 70 KARKMNGVTGENLMIILESRLDNVVFRLGFARTRKEARQSVRHGHFTVNGKRVDIPSYRV 129
Query: 446 R 448
+
Sbjct: 130 K 130
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 39.9 bits (89), Expect = 0.045
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +2
Query: 293 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 439
G + LE RL +F+ G+A +I AR L+ RHI V ++V+IPS+
Sbjct: 66 GQVLLQLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 39.9 bits (89), Expect = 0.045
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +2
Query: 275 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 442
K + +G + LE L +F+ G+A +I AR L+ RHI V ++V+IP +
Sbjct: 195 KAKWAIGRVLLQLLEMHLDNILFRLGMASTILGARQLVNHRHILVNGRIVDIPRLV 250
>UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S4 - Malawimonas
jakobiformis
Length = 225
Score = 39.9 bits (89), Expect = 0.045
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +2
Query: 308 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 451
+ LERRL T +F+ A S +AR LI HI + +VN+ S +V +
Sbjct: 107 NLLERRLDTILFRINWASSFFNARQLINHGHILINGNIVNVSSHLVNI 154
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 39.9 bits (89), Expect = 0.045
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +2
Query: 293 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 439
GL + LE RL VF+ G+A +I AR L+ HI V + V IPS+
Sbjct: 83 GLALLQMLEMRLDCIVFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 39.9 bits (89), Expect = 0.045
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +2
Query: 293 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 472
G + LE RL + V +AGLA SI AR +R ++ V + +IPSF R+ G +
Sbjct: 89 GTVLLQLLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSF--RVKPGSEVR 146
Query: 473 F 475
F
Sbjct: 147 F 147
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 39.1 bits (87), Expect = 0.079
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = +2
Query: 257 LDEKQMK--LDYVLGLKIEDFL---ERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQV 421
L E Q+K Y+ LKI + + E RL +F+ G AKSI+ AR LI I + +
Sbjct: 59 LKENQIKKYFKYIKLLKIFNLIQIIELRLDATIFRLGFAKSINQARQLITHGFIFINSIL 118
Query: 422 VNIPSFIV 445
V PSFI+
Sbjct: 119 VKKPSFIL 126
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 38.7 bits (86), Expect = 0.10
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +2
Query: 293 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 439
G + LE RL +F+ G+A +I AR L+ HI V ++V+IPS+
Sbjct: 80 GQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 37.9 bits (84), Expect = 0.18
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +2
Query: 314 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 448
LE R+ + ++++G+ +I AR LI +H+ V ++VNI SF ++
Sbjct: 91 LESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLK 135
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 37.9 bits (84), Expect = 0.18
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +2
Query: 263 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 442
E+ + + G + + LE RL V +AG A++I AR L+ RHI V V+ PSF
Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILVDGIRVDRPSFR 135
Query: 443 V 445
V
Sbjct: 136 V 136
>UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Bigelowiella natans|Rep: Chloroplast 30S ribosomal
protein S4 - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 194
Score = 37.9 bits (84), Expect = 0.18
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +2
Query: 293 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 439
G K+ LE RL T +++ G ++ AR LI HI V + V+IP F
Sbjct: 75 GDKLLQLLEMRLDTLLYRTGFVPTVASARQLISHGHINVNGKKVDIPGF 123
>UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11;
Mollicutes|Rep: 30S ribosomal protein S4 - Mycoplasma
gallisepticum
Length = 207
Score = 37.5 bits (83), Expect = 0.24
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 275 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 454
K+ +L + + LE RL VF+ G A + AR L+ H+ V + +IPS ++ L
Sbjct: 82 KMSGILTMNLFRTLESRLDNLVFRMGFAPTRRGARQLVSHGHVLVNGKTFDIPSALISLG 141
Query: 455 S 457
S
Sbjct: 142 S 142
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 37.1 bits (82), Expect = 0.32
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 314 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 448
LE RL V++ G A + AR L+ H V + VNIPS+++R
Sbjct: 96 LEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYLLR 140
>UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25;
Bacteria|Rep: 30S ribosomal protein S4 - Frankia sp.
(strain CcI3)
Length = 209
Score = 37.1 bits (82), Expect = 0.32
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = +2
Query: 293 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 472
G ++ LE RL V++ G A S AR +R H++V + V+IPS+ R+ ++
Sbjct: 89 GDELLKILESRLDNVVYRGGFAPSRDAARQAVRHGHVQVNGRKVDIPSY--RISENDIVE 146
Query: 473 FSLK----SPFGGGRPDVSRGR 526
+ K +PF R +GR
Sbjct: 147 IAPKARELTPFIVARETAGQGR 168
>UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia
burgdorferi group|Rep: 30S ribosomal protein S4 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 209
Score = 37.1 bits (82), Expect = 0.32
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +2
Query: 287 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 448
V G + LERR+ V++AG A S HAR ++ I + + V IPS I+R
Sbjct: 85 VTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSIILR 138
>UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyostelium
discoideum|Rep: Ribosomal protein S4 - Dictyostelium
discoideum (Slime mold)
Length = 300
Score = 36.3 bits (80), Expect = 0.56
Identities = 11/46 (23%), Positives = 30/46 (65%)
Frame = +2
Query: 314 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 451
LE+R+ + ++G +S++ AR +I +H+ V ++ ++P +++ +
Sbjct: 144 LEKRVDMVLLRSGFVRSLYEARQIINHKHLLVNGKIASLPGYMINV 189
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 36.3 bits (80), Expect = 0.56
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +2
Query: 311 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFS 478
F RRL T + + + + A I Q HIRV VVNIP++ V + HI ++
Sbjct: 116 FCRRRLATVLVQRKFCEHLKQAVTYIEQGHIRVGLDVVNIPAYHVTRELEDHITWA 171
>UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86;
Bacteria|Rep: 30S ribosomal protein S4 - Silicibacter
pomeroyi
Length = 206
Score = 36.3 bits (80), Expect = 0.56
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 293 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 448
G + LERRL V++A ++ AR + H+ V + VNIPS+ V+
Sbjct: 85 GENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVLVNGKRVNIPSYRVK 136
>UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35;
Bacteria|Rep: 30S ribosomal protein S4 - Listeria
innocua
Length = 200
Score = 36.3 bits (80), Expect = 0.56
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +2
Query: 314 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 445
LE+RL V++ GLA++ AR L+ HI V + V+IPS+ V
Sbjct: 90 LEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIPSYQV 133
>UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Stigeoclonium helveticum|Rep: Chloroplast 30S ribosomal
protein S4 - Stigeoclonium helveticum (Green alga)
Length = 2922
Score = 36.3 bits (80), Expect = 0.56
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +2
Query: 314 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 439
LE RL VF+ +A +I AR LI HI + K+ V IPS+
Sbjct: 109 LEMRLDNIVFRLHMAPTIKAARQLISHGHILINKKKVTIPSY 150
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 35.9 bits (79), Expect = 0.74
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 428 CSQLACGHEYAFAGSKFWHDGWTSPGQL*TPASAD 324
CS L H +FWH GW+SP Q TPA+A+
Sbjct: 90 CSSLL--HRGVLTVKQFWHVGWSSPSQSSTPAAAE 122
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 35.5 bits (78), Expect = 0.97
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +2
Query: 308 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 451
+ LE+RL VF+ G A SI AR L+ + V + VNI S I+++
Sbjct: 91 NLLEKRLDNVVFRLGFASSIPAARQLVSHGKVLVNGKKVNIGSQIIKV 138
>UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n=3;
Cyanidiaceae|Rep: Chloroplast 30S ribosomal protein S4 -
Cyanidium caldarium
Length = 192
Score = 35.5 bits (78), Expect = 0.97
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +2
Query: 293 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 439
GL + LE RL V++AG A ++ AR L+ H++V + V I S+
Sbjct: 82 GLALLTMLETRLDHLVYRAGFAPTLPAARQLVNHGHVKVNGKKVTIASW 130
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 35.5 bits (78), Expect = 0.97
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 311 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 445
F RRL T + K +A+ + A + Q H+RV VV P+F+V
Sbjct: 106 FCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLV 150
Score = 34.3 bits (75), Expect = 2.3
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +3
Query: 81 ELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIG 254
EL+++ Y L+ + + R +R+ AR L L E+D R+ ALL +L +G
Sbjct: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALG 87
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 35.1 bits (77), Expect = 1.3
Identities = 24/79 (30%), Positives = 36/79 (45%)
Frame = +2
Query: 209 IVRR*CPSTSSGSYWILDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 388
+ +R C IL EK + + V+ DF RRL V + + A LI
Sbjct: 74 LTKRICDRLYDLGVIILPEKGLHMIDVI--HASDFCRRRLAIVVKAKKMVTDVTQAETLI 131
Query: 389 RQRHIRVRKQVVNIPSFIV 445
+Q HI+V V+ P++IV
Sbjct: 132 QQGHIKVGPDVIRNPAYIV 150
>UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular
organisms|Rep: Ribosomal protein S4 - Leptosira
terrestris (Pleurastrum terrestre)
Length = 221
Score = 34.7 bits (76), Expect = 1.7
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +2
Query: 293 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 439
G + LE RL VF+ G+A +I AR L+ HI V + V+I S+
Sbjct: 94 GETLLQLLEMRLDNIVFRLGMAPTIPAARQLVNHGHIVVNNKKVDISSY 142
>UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribosomal protein S4,
putative - Plasmodium falciparum (isolate 3D7)
Length = 159
Score = 34.7 bits (76), Expect = 1.7
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 296 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 475
+ + F RRL +F+ ++I A I+ +IR+ V+N PSF + + HI +
Sbjct: 75 ITVSSFCRRRLAVLLFRLKFVQTIKLAITYIQHGNIRIGNNVINNPSFHINRNMEDHIKW 134
Query: 476 S 478
+
Sbjct: 135 A 135
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 34.7 bits (76), Expect = 1.7
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 296 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 445
+ F RRL + + +++++ HA +I H+RV VV P+F+V
Sbjct: 100 ISASSFCRRRLPVVLLRNKMSENLKHATQMIEHGHVRVGTDVVKDPAFLV 149
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 34.7 bits (76), Expect = 1.7
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 311 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 487
F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S I ++ S
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163
>UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5;
Alphaproteobacteria|Rep: 30S ribosomal protein S4 -
Zymomonas mobilis
Length = 204
Score = 34.7 bits (76), Expect = 1.7
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Frame = +2
Query: 242 GSYWILDEKQMKLDYVLGLKIED--------FLERRLQTQVFKAGLAKSIHHARILIRQR 397
G Y + EKQ + Y K++ LERRL V++A A +I AR L+
Sbjct: 60 GYYGDVTEKQFRRSYDDASKLKGDTSQNLIGILERRLDMIVYRAKFAPTIFAARQLVSHG 119
Query: 398 HIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 487
HIRV NI S R++ G I K+
Sbjct: 120 HIRVNGVKCNIAS--RRVNPGDEISLGSKA 147
>UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 739
Score = 34.3 bits (75), Expect = 2.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 355 GEVHPSCQNFDPAKAYSCPQASCEHPIIYCAP 450
G VHPSC + D + CP +CE P + C P
Sbjct: 136 GNVHPSCSDADGTSSSCCPPLTCE-PDMMCNP 166
>UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep:
Helicase SWR1 - Ustilago maydis (Smut fungus)
Length = 1830
Score = 34.3 bits (75), Expect = 2.3
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +3
Query: 60 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRR 239
EK ++ L+ + ++ LR + WR+ + R RKAA E E+ D ++L NA+L +
Sbjct: 615 EKKAEERRLRALAKWTLREVLKQWRLAVNVVRARKAAAEKAEKEKSDKEQL---NAILEQ 671
>UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S4 - Prototheca wickerhamii
Length = 511
Score = 34.3 bits (75), Expect = 2.3
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +2
Query: 314 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 475
+E+RL ++++G K+I AR R I V +V IPS I L+SG I +
Sbjct: 200 IEKRLDVVLYRSGFTKTIVAARQACRHSQIYVNSKVCRIPSTI--LESGDIISY 251
>UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;
Drosophila melanogaster|Rep: lethal (2) 35Bb CG31834-PA
- Drosophila melanogaster
Length = 291
Score = 33.9 bits (74), Expect = 3.0
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +2
Query: 302 IEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 463
I DF RL TQ F+ KSIH++ +++ +KQ+ NIP FI R GK
Sbjct: 149 IADFGTARL-TQ-FRRTSTKSIHNSTASCQRQKEEKKKQIQNIPRFIPRKKKGK 200
>UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative;
n=2; Filobasidiella neoformans|Rep: Nam9 protein,
mitochondrial, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 317
Score = 33.1 bits (72), Expect = 5.2
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +2
Query: 314 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 445
+ERRL +F++ A+++ AR + Q H+++ QV+ P+ ++
Sbjct: 140 IERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPNIML 183
>UniRef50_Q18V20 Cluster: Oligopeptide/dipeptide ABC transporter,
ATPase subunit; n=1; Desulfitobacterium hafniense
DCB-2|Rep: Oligopeptide/dipeptide ABC transporter,
ATPase subunit - Desulfitobacterium hafniense (strain
DCB-2)
Length = 317
Score = 32.3 bits (70), Expect = 9.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 585 CLINLPLHHWRSATLSLAEVLPLDTSG 505
C++N PLH + +S AE LDTSG
Sbjct: 228 CIMNYPLHPYTELLISCAEAFMLDTSG 254
>UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 157
Score = 32.3 bits (70), Expect = 9.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 320 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 445
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 604,567,954
Number of Sequences: 1657284
Number of extensions: 12266719
Number of successful extensions: 34363
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 33255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34355
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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