Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10783
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   151   1e-37
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   150   1e-37
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    32   0.074
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   0.52 
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   2.8  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    25   6.4  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   6.4  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   8.5  
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma...    25   8.5  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  151 bits (365), Expect = 1e-37
 Identities = 69/85 (81%), Positives = 78/85 (91%)
 Frame = +2

Query: 254 ILDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIP 433
           ILDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+P
Sbjct: 85  ILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVP 144

Query: 434 SFIVRLDSGKHIDFSLKSPFGGGRP 508
           SF+VRLD+ KHIDF+L SP+GGGRP
Sbjct: 145 SFVVRLDAQKHIDFALSSPYGGGRP 169



 Score =  132 bits (318), Expect = 5e-32
 Identities = 61/86 (70%), Positives = 72/86 (83%)
 Frame = +3

Query: 15  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 194
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 195 KDPKRLFEGNALLRRLVRIGYWMKNR 272
           KDPKRLFEGNA++RRLVR+G   ++R
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDESR 90


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  150 bits (364), Expect = 1e-37
 Identities = 69/85 (81%), Positives = 78/85 (91%)
 Frame = +2

Query: 254 ILDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIP 433
           ILDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+P
Sbjct: 85  ILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVP 144

Query: 434 SFIVRLDSGKHIDFSLKSPFGGGRP 508
           SF+VRLD+ KHIDF+L SP+GGGRP
Sbjct: 145 SFVVRLDTQKHIDFALSSPYGGGRP 169



 Score =  131 bits (317), Expect = 7e-32
 Identities = 60/80 (75%), Positives = 69/80 (86%)
 Frame = +3

Query: 15  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 194
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 195 KDPKRLFEGNALLRRLVRIG 254
           KDPKRLFEGNA++RRLVR+G
Sbjct: 65  KDPKRLFEGNAIIRRLVRLG 84


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 31.9 bits (69), Expect = 0.074
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 254 ILDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIP 433
           IL  K    D      +     RRL   + K  +++ +  A  LI Q H+RV   V+  P
Sbjct: 87  ILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDP 146

Query: 434 SFIV 445
           +++V
Sbjct: 147 AYLV 150


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = +1

Query: 301  D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHP 432
            D GLLGA+S   GVQS PG   P      P    + P  S   P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSP 1563


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 272 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 403
           +++D  L + +E FL++   TQ+    +A  I    + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 203 QEIVRR*CPSTSSGSYWILDEKQMKLDYVLGLKIEDFLERR 325
           +E +R    S  S +  ++ EK M+LD V G K+E  ++RR
Sbjct: 86  KETIRMDSQSEISSTMGLVGEK-MELDAVKGRKVESRVDRR 125


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 543 LSLAEVLPLDTSGRPPPNG-DFREKSMCLP 457
           LS+AE+LP D S R   +   F E S C P
Sbjct: 661 LSIAEILPADESLRYSSSSVPFYESSTCAP 690


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
 Frame = -2

Query: 603 IIIYIYCLINLPLHHWRSATLSLAEV-------LPLDTSGRPPPNGDFREKSMCLPESRR 445
           I I+IYCLI L   + R    S+ E+          D    P PN + R  +      RR
Sbjct: 7   IRIFIYCLIRLFSFNSRKRNSSIDELERGEINAFACDKQNTPSPNSECRPLTPLNSPFRR 66

Query: 444 TI 439
           T+
Sbjct: 67  TV 68


>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 296 DQAHNRVSSVFHPVSNTNQTT*KGITFE 213
           DQA N  S V H + N +QTT  G+ +E
Sbjct: 75  DQAINSTSRVCHELRNWDQTT-GGLAYE 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,114
Number of Sequences: 5004
Number of extensions: 47909
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)