Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10779X
(559 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 120 1e-27
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 113 7e-26
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 29 2.5
02_05_0384 - 28501536-28501777,28502408-28502630 29 3.3
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 28 5.8
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188... 28 5.8
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 120 bits (288), Expect = 1e-27
Identities = 57/90 (63%), Positives = 68/90 (75%)
Frame = +1
Query: 241 GSLAQKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYM 420
G KSA F+L LL+NAESNAD K LDVD L + HIQVN+A RRRTYRAHGRINPYM
Sbjct: 94 GRWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRAHGRINPYM 153
Query: 421 SSPCHIEVCLSEREDAVARVAPTDDAPAKK 510
SSPCH+E+ LSE+E+AV + T AP ++
Sbjct: 154 SSPCHVELILSEKEEAVKKEPETTIAPRRQ 183
Score = 100 bits (240), Expect = 7e-22
Identities = 54/97 (55%), Positives = 64/97 (65%), Gaps = 13/97 (13%)
Frame = +2
Query: 2 MGRYSREPDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKMPLRRAVRYL 145
MG+YS EP NP KS KA G +LRVHFK NT ETA A+RK+PL +A RYL
Sbjct: 1 MGKYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYL 60
Query: 146 KNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWP 253
++VI K+ IPFRR+ GGVGR AQ K + QGRWP
Sbjct: 61 EDVIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWP 97
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 113 bits (273), Expect = 7e-26
Identities = 56/91 (61%), Positives = 67/91 (73%)
Frame = +1
Query: 241 GSLAQKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYM 420
G KSA F+L LL+NAESNA+ K LDVD L + HIQVN+A RRRTYRAHGRINPYM
Sbjct: 82 GRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYM 141
Query: 421 SSPCHIEVCLSEREDAVARVAPTDDAPAKKS 513
SSPCHIE+ LSE+E+ V + P A+K+
Sbjct: 142 SSPCHIELILSEKEEPVKK-EPESQIAARKA 171
Score = 113 bits (271), Expect = 1e-25
Identities = 55/85 (64%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 181
M +YSRE +NP KS KA G +LRVHFKNT ETA AIRK+PL +A RYL++VI K+ IPF
Sbjct: 1 MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60
Query: 182 RRFNGGVGRCAQAK-QFGTTQGRWP 253
RR+ GGVGR AQAK + QGRWP
Sbjct: 61 RRYCGGVGRTAQAKSRHSNGQGRWP 85
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 244 SLAQKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQVNRAPCLR 378
+L + EF Q+ + +E S + + L + + I H+ + APCLR
Sbjct: 1030 ALRKSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLR 1076
>02_05_0384 - 28501536-28501777,28502408-28502630
Length = 154
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/93 (21%), Positives = 35/93 (37%)
Frame = +1
Query: 166 RVYSIPSLQRRRWSLCSSKAVWHNTGSLAQKSAEFLLQLLRNAESNADNKTLDVDRLVID 345
+ S+ SL+RRR LCS + N Q + F+ L +A K L + +
Sbjct: 62 KALSVASLRRRRPVLCSEISSLINQVIFEQFLSIFVCNLCIHARKQQPQKPLRLSAYAVQ 121
Query: 346 HIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEV 444
+ + Y ++ P S H+ +
Sbjct: 122 RKETTATTKTQYTCYLKRNKLRPSNSLQVHVPI 154
>06_03_0097 - 16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/73 (30%), Positives = 30/73 (41%)
Frame = +3
Query: 339 HRPHSGKSRALPTQTYIPCSRSHQPLHVVSLPHRSMSQRTRRCCRQGSPY**CPSEEKLS 518
HR +SR+ QT S S HRS +R+R R G+P E S
Sbjct: 865 HRAEKSRSRSSHRQTQSGSLDSDS----TSDQHRSRERRSRHKIRSGTPGSDSSIEHHRS 920
Query: 519 KKKLARQKEKMMR 557
KK+ + K + R
Sbjct: 921 KKRKSHSKHRTRR 933
>02_01_0282 +
1882844-1883413,1883519-1883644,1883733-1883930,
1884442-1884666,1884844-1885224,1885282-1885989,
1886546-1886839,1887211-1887709,1887949-1888721
Length = 1257
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 451 SEREDAVARVAPTDDAPAKK 510
+E E+A A+ AP +APAKK
Sbjct: 20 AEEEEAAAKTAPAAEAPAKK 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,083,491
Number of Sequences: 37544
Number of extensions: 336652
Number of successful extensions: 1000
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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