Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10779X
         (559 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)              122   2e-28
SB_52240| Best HMM Match : DUF1700 (HMM E-Value=4.1)                   28   5.9  

>SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)
          Length = 142

 Score =  122 bits (294), Expect = 2e-28
 Identities = 55/87 (63%), Positives = 70/87 (80%), Gaps = 2/87 (2%)
 Frame = +2

Query: 2   MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 181
           M RY+ +P+NP KSCKARGSNLRVH+KNT+E AMAI+ M +R+A RYLK+V  KK+ +PF
Sbjct: 1   MTRYATDPENPTKSCKARGSNLRVHYKNTHEAAMAIKGMHVRKANRYLKDVCAKKQLVPF 60

Query: 182 RRFNGGVGRCAQAKQFGT--TQGRWPR 256
           R++NGGVGR AQAK      +QGRWP+
Sbjct: 61  RKYNGGVGRKAQAKNLKVPGSQGRWPK 87



 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 42/57 (73%), Positives = 48/57 (84%)
 Frame = +1

Query: 241 GSLAQKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRIN 411
           G   +KSAE LLQLL+NAESNA+ K LDVD LV++HIQVN AP +RRRTYRAHGRIN
Sbjct: 83  GRWPKKSAEILLQLLKNAESNAEFKGLDVDSLVVEHIQVNEAPSMRRRTYRAHGRIN 139


>SB_52240| Best HMM Match : DUF1700 (HMM E-Value=4.1)
          Length = 254

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 238 TGSLAQKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPY 417
           T +L +   E L      A  + D  T   +   +DH+  ++   + R  YR    +NP 
Sbjct: 22  TSALTECYHEALCMSYNEAPVSDDGLTFPCELNAVDHVVEDKL--VPRAGYRYCSFMNPC 79

Query: 418 MSSPC 432
           +SSPC
Sbjct: 80  VSSPC 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,358,514
Number of Sequences: 59808
Number of extensions: 382726
Number of successful extensions: 1120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)