Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10779X
         (559 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    27   0.55 
L10440-1|AAA29360.1|  154|Anopheles gambiae transposase protein.       23   5.1  
AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical prote...    23   6.8  

>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 26.6 bits (56), Expect = 0.55
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = +1

Query: 124 PSCCSLPQKRD*KERVYSIPSLQRRRWSLCSSKAVWHNTGSLAQKSAEFLLQLLRNAESN 303
           PS   L   R     VYS+    RRRWSLC  K  + +     Q+S      LL    S 
Sbjct: 9   PSGARLSISRGSPTGVYSV----RRRWSLC-QKLHFRDQVCCVQRSPPHWPYLL--CSSC 61

Query: 304 ADNKTLDVDRLVIDHIQVNRAPCLR-RRTYRA 396
           +    L + +L +DH +  +A  L+  R +RA
Sbjct: 62  SAMPALKILQLNVDHCREGQALALQAAREHRA 93


>L10440-1|AAA29360.1|  154|Anopheles gambiae transposase protein.
          Length = 154

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 333 ASHRPHSGKSRALPTQTYIPCSRS 404
           A+ RPH  K + L  Q   PC +S
Sbjct: 112 AAKRPHMKKKKVLFHQDNAPCHKS 135


>AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical protein
           protein.
          Length = 297

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 339 HRPHSGKSRALPTQTYIPCSRSHQPLHVVSLPHRSMSQ 452
           HR  +G+S   P+   +  ++ HQ +    L +R +S+
Sbjct: 195 HRQEAGQSLKGPSNNMLQANKPHQQVDEHELKNRIISK 232


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,520
Number of Sequences: 2352
Number of extensions: 13008
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52142868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)