BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV10779X (559 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 25 0.52 AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 22 4.8 DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 21 6.4 >AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein 75 protein. Length = 900 Score = 25.0 bits (52), Expect = 0.52 Identities = 11/34 (32%), Positives = 15/34 (44%) Frame = -1 Query: 175 NTLFLFNHVFEVTNSTTERHLSDCHCGLICVLKV 74 N FL + +F+ LSD GL C + V Sbjct: 312 NARFLMDSMFDFAERVNSLRLSDAELGLFCSVVV 345 >AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. Length = 349 Score = 21.8 bits (44), Expect = 4.8 Identities = 9/18 (50%), Positives = 10/18 (55%) Frame = +3 Query: 60 QTSVFTLRTHMRPQWQSE 113 QT VF L TH W S+ Sbjct: 171 QTIVFHLETHPNVTWYSQ 188 >DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine receptor beta1subunit protein. Length = 520 Score = 21.4 bits (43), Expect = 6.4 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Frame = +1 Query: 187 LQRRRWSLCSSKAVWHNTGSLAQKSAEFLLQLLRNAESNADNK-TLDVDRLVIDHIQV 357 L RR S S + S A ++ EF+ + LRN + + +VID +Q+ Sbjct: 426 LADRRGSESSDSVLLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQL 483 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 154,611 Number of Sequences: 438 Number of extensions: 3040 Number of successful extensions: 4 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4 length of database: 146,343 effective HSP length: 54 effective length of database: 122,691 effective search space used: 16072521 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -