Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10779X
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi...   116   1e-26
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi...   115   2e-26
At5g61490.1 68418.m07715 hypothetical protein                          28   4.9  
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain...    27   6.4  
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator...    27   8.5  

>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
           to ribosomal protein GI:19101 from [Hordeum vulgare]
          Length = 175

 Score =  116 bits (279), Expect = 1e-26
 Identities = 57/85 (67%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
 Frame = +2

Query: 2   MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 181
           M +YS+EPDN  KSCKARGS+LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 182 RRFNGGVGRCAQAK-QFGTTQGRWP 253
            RF  GVGR AQAK +    QGRWP
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWP 85



 Score =  114 bits (274), Expect = 4e-26
 Identities = 58/92 (63%), Positives = 69/92 (75%), Gaps = 1/92 (1%)
 Frame = +1

Query: 241 GSLAQKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYM 420
           G    KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A   RRRTYRAHGRINPYM
Sbjct: 82  GRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYM 141

Query: 421 SSPCHIEVCLSEREDAVARVAPTD-DAPAKKS 513
           S+PCHIE+ LSE+E+ V +   T   A +KKS
Sbjct: 142 SNPCHIELILSEKEEPVKKEPETQLAAKSKKS 173


>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
           to GB:P51413 from [Arabidopsis thaliana]; similar to
           ESTs gb|L33542 and gb|AA660016
          Length = 176

 Score =  115 bits (277), Expect = 2e-26
 Identities = 56/85 (65%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
 Frame = +2

Query: 2   MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 181
           M +YS+EPDN  KSCKARG++LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 182 RRFNGGVGRCAQAK-QFGTTQGRWP 253
            RF  GVGR AQAK +    QGRWP
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWP 85



 Score =  113 bits (272), Expect = 8e-26
 Identities = 56/90 (62%), Positives = 66/90 (73%)
 Frame = +1

Query: 241 GSLAQKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYM 420
           G    KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A   RRRTYRAHGRINPYM
Sbjct: 82  GRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYM 141

Query: 421 SSPCHIEVCLSEREDAVARVAPTDDAPAKK 510
           S+PCHIE+ LSE+E+ V +   T  A   K
Sbjct: 142 SNPCHIELILSEKEEPVKKEPETQLAAKSK 171


>At5g61490.1 68418.m07715 hypothetical protein
          Length = 260

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 181 PSLQRRRWSLCSSKAVWHNTGSLAQKSAEFLLQLLRNAESNADN 312
           PS+QR   SL S KAVW      A  + E + +L+ NAE + ++
Sbjct: 143 PSVQRMVMSLTSDKAVWD-----AVMNNEVVRELISNAERSEED 181


>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
            protein low similarity to transcription co-repressor Sin3
            [Xenopus laevis] GI:4960210; contains Pfam profile
            PF02671: Paired amphipathic helix repeat
          Length = 1378

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 14   SREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKE 169
            SR+P     S       + VH +N Y   +    +P R +++ + N+IEK E
Sbjct: 1222 SRKPGRVIDSVYYENVRVLVHEENIYR--LECSSLPSRLSIQLMDNIIEKPE 1271


>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
           putative similar to SWISS-PROT:P52178 triose
           phosphate/phosphate translocator [Cauliflower] {Brassica
           oleracea}
          Length = 408

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +1

Query: 169 VYSIPSLQRRRWSLCSS 219
           V SIPSL RR W L SS
Sbjct: 43  VVSIPSLSRRSWRLASS 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,423,549
Number of Sequences: 28952
Number of extensions: 252836
Number of successful extensions: 708
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)