Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10776
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 185 5e-48
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 98 1e-21
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 85 1e-17
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 58 8e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 44 1e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 42 5e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 40 4e-04
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.14
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 29 0.72
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.95
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 27 2.2
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 27 2.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.9
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.8
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.1
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 26 5.1
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|... 25 6.7
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 25 6.7
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 8.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 185 bits (450), Expect = 5e-48
Identities = 81/84 (96%), Positives = 82/84 (97%)
Frame = +2
Query: 257 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 436
GMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHG
Sbjct: 15 GMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 74
Query: 437 IVTNWDDMEKIWHHTFYNELRVAP 508
IV NWDDMEKIWHHTFYNELRVAP
Sbjct: 75 IVNNWDDMEKIWHHTFYNELRVAP 98
Score = 78.2 bits (184), Expect = 9e-16
Identities = 34/40 (85%), Positives = 37/40 (92%)
Frame = +1
Query: 505 PQEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 624
P+EHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQ
Sbjct: 98 PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQ 137
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +3
Query: 219 DEEVAALVVDNG 254
+EE+AALV+DNG
Sbjct: 2 EEEIAALVIDNG 13
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 97.9 bits (233), Expect = 1e-21
Identities = 41/79 (51%), Positives = 57/79 (72%)
Frame = +2
Query: 257 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 436
G KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L ++ PIE G
Sbjct: 19 GFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERG 78
Query: 437 IVTNWDDMEKIWHHTFYNE 493
I+ NW DME+IW + + ++
Sbjct: 79 IIQNWSDMEEIWSYIYSDQ 97
Score = 47.2 bits (107), Expect = 2e-06
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +1
Query: 505 PQEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 624
P+EHP+LLTE PL N+EK+ + +ET N PA+ ++Q
Sbjct: 103 PEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQ 142
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 84.6 bits (200), Expect = 1e-17
Identities = 38/87 (43%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Frame = +2
Query: 257 GMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIE 430
G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R +L +KYP+E
Sbjct: 13 GFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPME 72
Query: 431 HGIVTNWDDMEKIWHHTFYNELRVAPR 511
+GI+ ++++M ++W +TF+ +L++ PR
Sbjct: 73 NGIIRDFEEMNQLWDYTFFEKLKIDPR 99
Score = 50.0 bits (114), Expect = 3e-07
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +1
Query: 505 PQEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 624
P+ +LLTE P+NP ANREKM + MFE + +YVAIQ
Sbjct: 98 PRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQ 137
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 58.4 bits (135), Expect = 8e-10
Identities = 23/42 (54%), Positives = 30/42 (71%)
Frame = +1
Query: 499 CRPQEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 624
C P++H LLTE PLNP NRE +IMFE+FN +Y+A+Q
Sbjct: 119 CEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQ 160
Score = 52.8 bits (121), Expect = 4e-08
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 24/110 (21%)
Frame = +2
Query: 257 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK--------------D 367
G K G+AG+DAP VFP+++ R G G M K D
Sbjct: 15 GYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLD 73
Query: 368 SYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPRN 514
++G++A K +L YPI HG + NWD ME+ W + + LR P +
Sbjct: 74 FFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPED 123
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 44.4 bits (100), Expect = 1e-05
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 466 DLASY-LLQ*AACRPQEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 624
DL Y L Q P EHP+L+TE NP NR K + MFE+ PA Y+A Q
Sbjct: 82 DLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQ 135
Score = 36.7 bits (81), Expect = 0.003
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = +2
Query: 266 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 445
+ GF+G+D P+ V PS G + G + Y+ +S G + +K I +G V
Sbjct: 24 RIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNPG-MEIKNAIRNGWVE 75
Query: 446 NWDDMEKIWHHTFYNELRVAP 508
NWD +W + +L+ P
Sbjct: 76 NWDVTVDLWRYGLEQQLKTNP 96
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 42.3 bits (95), Expect = 5e-05
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +2
Query: 266 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIV 442
+AG+ G+ P+ VF ++V R R + + + + VG++ + G ++ + P E ++
Sbjct: 37 RAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSPFERNVI 92
Query: 443 TNWDDMEKIWHHTF 484
+NWD ME++ +TF
Sbjct: 93 SNWDLMEQVLDYTF 106
Score = 38.3 bits (85), Expect = 9e-04
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 511 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI 621
EHP+ +TE NP R MT+++FE +N P++ I
Sbjct: 115 EHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGI 151
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 39.5 bits (88), Expect = 4e-04
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Frame = +2
Query: 254 PGMC--KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI--LTLKY 421
PG C + G+AG+++P + PS + GV + ++ YV DE Q I + +K
Sbjct: 17 PGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPGMEVKN 70
Query: 422 PIEHGIVTNWDDMEKIWHHTFYNELRVAP 508
+GI+ +W+ W +L+V P
Sbjct: 71 GKSNGIIQDWESTLYTWERGLKEKLQVNP 99
Score = 34.3 bits (75), Expect = 0.015
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +1
Query: 505 PQEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 624
P E+ +++TE NP++ R+++ + FE + PA Y+ Q
Sbjct: 99 PTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQ 138
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.14
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 281 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 424
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 28.7 bits (61), Expect = 0.72
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 492 SCVSPPGTPSPAH*GSPQPQGQQREDDPDHVRNIQHARHVRRHP 623
S VS P PS H G+P P G+Q + N+Q + + P
Sbjct: 100 SLVSTPTAPSANHHGNPFPNGKQSIKAMPSLVNLQEDSVISKFP 143
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 0.95
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 389 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 300
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 321 PTIEGNTARGASSPAKPALHIPGHCLLPT 235
P +E + +S+PA P L+ P H PT
Sbjct: 107 PNVEADVKSLSSTPAAPQLNSPSHSYEPT 135
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 422 PIEHGIVTNWDDMEKIWHHTFYNELRVAPRNT 517
PI+ G V +W+ ++ W H Y+ L P +T
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDT 143
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 2.9
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 381 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 265
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 523 LLTEAPLNPKANREKMTQIMFETFN 597
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 418 FEGQDTSFALCLISYIRVLLSHTDHHA 338
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 5.1
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +2
Query: 356 GQKDSYVGDEAQSKRGILTLK-YPIEHGIVTNWDDM-EKIWHHTFYNELRVAPRNTQSCS 529
G +SY G A +GIL + + + +W ++ EKI H N L VAP T S S
Sbjct: 550 GTYESYEGSPAS--QGILQYDMWNVNPTDLWDWAELKEKIAKHGIRNSLLVAPMPTASTS 607
>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +2
Query: 131 VSHG*QSLQGV*FSSCHTYILLISLIQDVRRRSCRVGSRQWPGMCKA 271
+ H + + + F+ C + I + L++ + S +G +QW C A
Sbjct: 151 IKHFLKKWRNMFFTFCKSPIFCLVLLKAENKLSSHLGDQQWGWKCSA 197
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -1
Query: 376 YIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGPLS 245
+I + +S + + + PSHD+ + +TG H PLS
Sbjct: 559 HIALSISRKERYNNLVPPSHDKPKQVKPKTYGRKTGSKHYAPLS 602
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 341 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 427
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,169
Number of Sequences: 5004
Number of extensions: 54541
Number of successful extensions: 152
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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