Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10776
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   1.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   7.4  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   7.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.8  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 251 WPGMCKAGFAGDDAPRAVFPSIV 319
           WP    A   GDD  RA+  +++
Sbjct: 224 WPSFNSAALEGDDQQRAIINTLL 246


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -1

Query: 316 DRGEHGARSIISCETGLA-HTGPL 248
           D GEH   ++   E GLA  T PL
Sbjct: 130 DPGEHNGDTVTDVEAGLASRTNPL 153


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -1

Query: 316 DRGEHGARSIISCETGLA-HTGPL 248
           D GEH   ++   E GLA  T PL
Sbjct: 125 DPGEHNGDTVTDVEAGLASRTNPL 148


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -3

Query: 515 CSWGRHAAHCRRYDAKSSP 459
           CSWGR      RY   S P
Sbjct: 549 CSWGRAINVANRYVYASQP 567


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 167 IKRPAVTANREKQIPIAGR 111
           IK P + ANR K   IAG+
Sbjct: 284 IKLPKLAANRAKLEEIAGK 302


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 257 GMCKAGFAGD 286
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 294 GASSPAKPALHIPGHCLL 241
           G + PA+  +HIP H L+
Sbjct: 22  GWNVPAEELIHIPEHWLV 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,166
Number of Sequences: 438
Number of extensions: 4003
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)